Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2502 ATGTTGTTGGCTCGATTCCTCGCCGTCGACGTTTTCCTCACATGTCTCTGCTTGACTACCCTCGGTGCCACCGGTACTCGGCTGCCGGCTGACGAAGTTGATGCGTTGAGGGAGATCGGGATTACATTGGGGAAGACGGACTGGAACTTCGACGCCGATCCATGCGGCGGCGTTGCCAGCGGTTGGATATCCAGTTCTCCGTTCCACCCTAGTTTTAATAACACTGTCCTCTGCGACTGCAACTTCCTCAACAAAACCGTCTGTCACGTTACTAACATTCTTCTAAAGGCGCAAAGCCTTCCAGGTACTCTGCCACCGCAAATAGTGAAGTTGCATTTTCTGCAAGAACTTGATCTCACCCGCAACTATCTCAACGGCACAATTCCTCCAGAATGGGGTTCATCCAGCCTTGTCAAAATTTCCCTTCTTGGAAATCGATTGACAGGCCCAATCCCAAAAGAGATTGGAAATATCAGCACTCTTGTAGATTTGGTTCTGGAAATGAATCATCTCTCTGGAAGTGTACCTGCAGAACTTGGAAATTTGCGCAACTTATCAAGATTACTACTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGAAGGACTTTAGAATTAGTGATAATCACTTCACAGGGCCAATACCTAAGTTTATACAAAATTGGTCGAATCTTGAAAGACTAGCCATTCAGGCAAGTGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAGTTAACTGATCTAAGAATCAGTGACTTGAATGGAGGTTCATCATCCTTTCCTCCCATTACTACTTTGACTAAATTGAAATACGTGGTATTGAGAAGTTGCAATATAACTGGGATGCTGCCTGGCGAACTTGGTAGGTTGACAACATCGAAAGTCTTAGACTTCAGCTTCAACAAAATTATTGGACCAATACCTGATAGCTTTGAAGCTTTGGAAAGTGTGGATAAAATATATTTAACTGGAAACTTGCTTAATGGATCAGTGCCCCCTTGGATGCTACTGCGAGGAGAAAGCATTGACCTCTCATATAACAAATTTACAAGTCAAAACACTGGTTGTCAATCAAAGAATTTAAACTTGTTTGCGAGTTCTTTACAGGACACTAATTCCGAAACAGTTTCATGTTTACTGAGCACTTGTGGAAAAACATTCTACTCTCTCCATATCAACTGTGGTGGGAAAGAAGAATTAATTAATGGAACAACCAAATTTGACGCCGACGAAGACACCGGAAAATCATCCTTGTTTGCTCAAGGTGGAGAAAATTGGGTGTTTAGCAACACTGGTAATTTTTTAGACGATGATCGCCCAACGGATGACTTTATTGCAATAAATTCATCTGCTCTCACAATGCCAAATCCTGAGTTGTACACTACGGCACGCATTTCTCCAATCACTCTTACTTATTATGCATATTGCATGGGAAGTGGAAACTACACCGTAAGCCTCCATTTTGCTGAGATAGCATTTACTAATGACAAATCATATAGAAGCCTTGGCAGGCGCGTATTTGATATCTATATTCAGGGAAAGCTGGAGTTGAAAGATTTTAATATTGCAGATGCAGCTAATGGTATTGGCAAATCTTTTGTAAAGAAATTCACTGTTTCTGTGACTAATGGTACTGTAGAGATCCGCCTATTTTGGGCTGGGAAGGGATCAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTGATTTCAGCCATTTCTGTAAATCCGGATTTTATGCCACCATCAGAAGGTGGAAATCCCATATCTGCCGGTGTAGTGGTTGGAATTGTGGTTGCCGTACTCTTTGTTATCATCTTGGTTATTGGAGTCTTATGGTGGATTGGCTGCTTTAGAAAGAAAAGCACTCTTGAACAAGAGATGAAGGGTCTAGATCTAGGAACAAGTTCATTTTCATTAAGGCAAATCAGAGCTGCCACTAACAGTTTTGATGCTACCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTAGTAGACGGCACTATAATTGCAGTGAAGCAACTTTCTTCAAAATCAAAGCAAGGAAATCGCGAATTTTTAAATGAGATTGGGATGATATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTATGGATGTTGTGTCGAAGGGAATCAACTTTTGCTGATATATGAATATCTAGAAAATAATAGTCTTGCTCGCGCATTATTTGGGCCTAAAGAATGTCAACTGAAATTGGATTGGCCAATTAGGCACAAGATTTGTGTCGGTATAGCTAGAGGCTTAGCATTCCTTCATGAGGAGTCACGACTTAAAATCGTTCACCGAGACATCAAAGCTACCAATGTTCTACTTGATAAAAATCTTAACCCCAAGATTTCCGACTTTGGTTTGGCAAAGCTAGATGACGAAGAAAATACACATATTAGCACCCGGATTGCTGGAACCTATGGGTATATGGCACCAGAATATGCCATGCGAGGTCACCTAACAGACAAAGCAGATGTTTATAGCTTTGGCATCGTGGCCTTGGAAGTACTAAGCGGCCGAAGTAACACAATTTTCCGTTCCAAGGATGATTGTTTTTATCTTCTTGACTATGCTAATACTTTAAAAGAGGAAGGCAGGTTATTAGATCTTGTGGATTCACGATTAGACTCAGAATTCAACAAGGAAGAGGCAATGATGATGATCAATATAGCTCTCCGATGTACGAACGCCATTGCTGCAGAGAGACCTACCATGTCATCAGTGGTGAGCATGCTGGAAGGAAAGGTCCATGTGAAGGATGTTGTTTCAGATCCTAGCTTCTCAAAACAAGATGTGCATTATCACCAAAAAGGGAAAACGAAAGATGAGAGTCCGACACAAAATATATCGATGGATGGACCGTGGACAGGTTCCTCGACGTCTGGAATCGATCTCTATCCCATGCTCATGGATTCTCAATACTTGGAGAGCAGGAATTAG 3003 41.92 MLLARFLAVDVFLTCLCLTTLGATGTRLPADEVDALREIGITLGKTDWNFDADPCGGVASGWISSSPFHPSFNNTVLCDCNFLNKTVCHVTNILLKAQSLPGTLPPQIVKLHFLQELDLTRNYLNGTIPPEWGSSSLVKISLLGNRLTGPIPKEIGNISTLVDLVLEMNHLSGSVPAELGNLRNLSRLLLTSNNFSGELPSSLARIASLKDFRISDNHFTGPIPKFIQNWSNLERLAIQASGLSGPIPSEIGLLTKLTDLRISDLNGGSSSFPPITTLTKLKYVVLRSCNITGMLPGELGRLTTSKVLDFSFNKIIGPIPDSFEALESVDKIYLTGNLLNGSVPPWMLLRGESIDLSYNKFTSQNTGCQSKNLNLFASSLQDTNSETVSCLLSTCGKTFYSLHINCGGKEELINGTTKFDADEDTGKSSLFAQGGENWVFSNTGNFLDDDRPTDDFIAINSSALTMPNPELYTTARISPITLTYYAYCMGSGNYTVSLHFAEIAFTNDKSYRSLGRRVFDIYIQGKLELKDFNIADAANGIGKSFVKKFTVSVTNGTVEIRLFWAGKGSNAIPVRGVYGPLISAISVNPDFMPPSEGGNPISAGVVVGIVVAVLFVIILVIGVLWWIGCFRKKSTLEQEMKGLDLGTSSFSLRQIRAATNSFDATNKIGEGGFGPVYKGVLVDGTIIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCVEGNQLLLIYEYLENNSLARALFGPKECQLKLDWPIRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDDEENTHISTRIAGTYGYMAPEYAMRGHLTDKADVYSFGIVALEVLSGRSNTIFRSKDDCFYLLDYANTLKEEGRLLDLVDSRLDSEFNKEEAMMMINIALRCTNAIAAERPTMSSVVSMLEGKVHVKDVVSDPSFSKQDVHYHQKGKTKDESPTQNISMDGPWTGSSTSGIDLYPMLMDSQYLESRN 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37094130 37110254 + Sed0026644.1 Sed05g2502 715128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2502 1000 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
Sed05g2502 1000 Gene3D Phosphorylase Kinase; domain 1 628 737 - -
Sed05g2502 1000 Gene3D Transferase(Phosphotransferase) domain 1 738 946 - -
Sed05g2502 1000 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 949 IPR051824 -
Sed05g2502 1000 Pfam Leucine Rich Repeat 114 133 IPR001611 GO:0005515(InterPro)
Sed05g2502 1000 Pfam Leucine Rich Repeat 306 326 IPR001611 GO:0005515(InterPro)
Sed05g2502 1000 Gene3D Ribonuclease Inhibitor 267 376 IPR032675 -
Sed05g2502 1000 Gene3D Ribonuclease Inhibitor 193 266 IPR032675 -
Sed05g2502 1000 SUPERFAMILY Protein kinase-like (PK-like) 646 950 IPR011009 -
Sed05g2502 1000 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 590 - -
Sed05g2502 1000 ProSiteProfiles Protein kinase domain profile. 662 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2502 1000 MobiDBLite consensus disorder prediction 948 977 - -
Sed05g2502 1000 CDD STKc_IRAK 668 935 - -
Sed05g2502 1000 SUPERFAMILY L domain-like 71 346 - -
Sed05g2502 1000 Pfam Protein tyrosine and serine/threonine kinase 665 933 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2502 1000 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
Sed05g2502 1000 Pfam Malectin domain 401 585 IPR021720 -
Sed05g2502 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2502 1000 Gene3D Ribonuclease Inhibitor 48 192 IPR032675 -
Sed05g2502 1000 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 266 - -
Sed05g2502 1000 MobiDBLite consensus disorder prediction 948 963 - -
Sed05g2502 1000 SMART serkin_6 662 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2502 1000 Gene3D - 399 590 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2499 Sed-Chr5:37050159 Sed05g2502 Sed-Chr5:37094130 0.00E+00 dispersed
Sed05g2500 Sed-Chr5:37050159 Sed05g2502 Sed-Chr5:37094130 0.00E+00 dispersed
Sed05g2502 Sed-Chr5:37094130 Sed05g2506 Sed-Chr5:37142821 0.00E+00 dispersed
Sed05g2501 Sed-Chr5:37063857 Sed05g2502 Sed-Chr5:37094130 0.00E+00 tandem
Sed05g2502 Sed-Chr5:37094130 Sed05g2503 Sed-Chr5:37110318 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79226 PF07714 PK_Tyr_Ser-Thr 6.60E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2502 - - - 0.0