Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2503 ATGTGTGCTTATTATATCTTTTGTTTGTTTTATAAATTTGTGCTCTCCTTAAAGTGGCAGTACCTAGCCAAATGCCAATCTCTAGCCAATTATTTTGAGGCGCTGAGAGAGATCGGGAGGACGTTGGGGAAGGCGGATTGGGATTTCTCGGCGGATCCATGCGGCGGGTCGGGGAGCGGGTGGATATCGGGTTATTTGGATTATACGTTGGATGCTAATTTTGCTAATAATGTGACATGCAACTGCACGTTCCACAACCATACACTCTGTCACGTTACCCATATTATTCTAAAGGCGCAAAACCTTCAAGGAACTCTGCCACCGCAGATAGTAAGGTTACCGTTTCTGCAAGAACTAGATCTTAACCGCAATTACCTCAACGGCTCAATTCCTCCAGAATGGGGTTCCACCAACCTCATCAACCTTACTGTTTCTGCAAATCGATTGACGGGTCCAATCCCAAAGGAGATTGGAAACATCACCACTCTTGTAGGGTTGGTTTTGGAACTCAATTATTTCTCTGGAAAGATACCTCCAGAACTTGGGAATTTGTCTAGGTTATCAAGATTACATCTTTCTTCAAACAAATTGTCTGGGAAGCTCCCAACTTCACTTGCAAGGTTAACCTCATTGAAGGACGTCCGAATTAGTGATAATCACTTAACAGGGCCAATGCCGAAGTTCATTAAAAGCTGGACGAAGCTTGAAAGATTAGCTTTCCGAGCAAGCGGGTTGAGTGGACCACTTCCTTTTGAAATTGGGCTTTTGACAAACTTGTCTGATCTGAGAATCAGTGACTTAAATGGAGGTTCATCACCATTTCCACCCCTTTATAATTTGAGAAAATTGAAAATGCTGGTATTGAGGAATTGCAATATAACTGGGATGCTTCCCAACAATCTTGATAGGCTGACAGAATTAAAAAGCTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGCCAGCTTTGAAGCTTTGAGAAAAGTGGATACCATATATTTAACTGGAAATTTGCTAAATGGATCAGTGCCTTCTTGGATGCTACAGGAGGGAGAACACATTGATCTCTCTTATAACAAATTTACTCCAATAGATGTTCAAAATATTGGTTGTGAATTACAAAATACAAATCTTTTTGCGAGCTTTTCACAAGACAATAGTTCCAATGGGACGGTATCATGTTTAGCTGGCGTTTGTGAAAAAATTTGGTTCTCTCTCCATATTAACTGTGGTGGGAAGGAAGAATTAGTCAACGGAATCAAGTTTGATGGCGACACTAACACTGGAAAATCATCCTTGTTTTTTCAAGGCGGAGAAAATTGGGGATTTAGCAACACGGGTGGTTTTTTGGATGATGACAGCTCAACTGACGACTTTATTGCATTGAATTATTCTACTATTTCAATCCAAAATCATGAACTCTTCACAACAGCACGCGCTACTCCAATTTCTCTAACTTATTATGCGTATTGCATGAATAATGGAGACTACACACTAAGCCTCTATTTTGCCGAGATAGTGTTTACAAATGACAAATCATACAAAAGCCTTGGTAGACGCATATTTGATGTCTACGTTCAGGGAAAGCTGGTGTTGAAAGATTTTAATATTGTAGATGAAGCTGGTGGTGTTGGTAAATCTTTTGTAAAGAAATTCAGAATTTCTGTGACCAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGAAAGGGGACACATTCAATCCCTATGAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGTGCCACTATCAAAAGATGGAAATGTCATGGTTTTGGGTCTAGAGGTTGGAATTGTGGTCATCATGCTCTGTCTTATGATATTGGTTCAAATAGTCTTGTGGTTGAGAGGCCGCTCAAGAAATAAAAGCACACTTGAACAAGAGTTGAAGGGCTTCGATCTAGGAACATGTTCATTTTCATTAAAACAAATGAGATATGCCACTAACAATTTTGATATTGCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTTCTGATGGGACTGCAATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAATCGCGAATTTTTGAATGAGTTAGGCATGATATCTTCATTGCAGCACCCTAATCTAGTGAAGCTTTATGGATGTTGTATTGAAAGAGATCAACTATTGCTAATATACGAGTATCTAGAAAATAATAGTCTTGCTCGCTCCTTATTCGGATCTGAGGAATCTCAAATGAAATTGGATTGGCGAACTAGGCACAAGATTTGTATTGGAATAGCTAGAGGTTTGGCATATATTCATGAAGAGTCAAGGCTAAAGATTGTTCATCGAGACATCAAAGCTACCAATATTTTGCTTGATAAAAATCTAAACCCAAAAATTTCTGACTTTGGTTTGGCCAAGTTGAATGAAGAAGAAAATACACACATCAGCACACGGGTTGCTGGAACCTTTGGGTATATGGCACCGGAATATGCCATGCGTGGCTATTTAAGTGATAAAGCAGATGTTTATAGCTTTGGCATCGTAGTGTTGGAAATAGTCAGTGGTCGAAGAAACACAAGTTTTGGAACCAAGGATGATTGTTTTTACCTTATTGACTATGCATATACTTTAAAAGAGAAAGACAGTTTACAAGAGCTTGTTGATCCACGATTAGTCTCCAAAATAAACAAGAGAGAGGCAATGAGGGTGATCGATGTTGCTCTCCAATGCACGAATGCCATTGCTGCGGAAAGACCCACCATGTCATCAGTGGTGAGCATGCTGAAAGGGAACGATGTTGTGAAGGAGGTGGTTTCAGATCCTAATATCTCAAAACAAGATGCAAATGCAATGTGGAGCCAAGTTTATCGCCAAAAAAGGCAAACAACGAGTGAGATCTCGGTGCAAAGTGTGTCACCATGGACGCCGACAGGTTCTTCGAGTACTGGTTCTCATATATATCCTATCTTTAAGGATTCCAAGTACATGGAGGGTAGGAAGTAG 3033 39.96 MCAYYIFCLFYKFVLSLKWQYLAKCQSLANYFEALREIGRTLGKADWDFSADPCGGSGSGWISGYLDYTLDANFANNVTCNCTFHNHTLCHVTHIILKAQNLQGTLPPQIVRLPFLQELDLNRNYLNGSIPPEWGSTNLINLTVSANRLTGPIPKEIGNITTLVGLVLELNYFSGKIPPELGNLSRLSRLHLSSNKLSGKLPTSLARLTSLKDVRISDNHLTGPMPKFIKSWTKLERLAFRASGLSGPLPFEIGLLTNLSDLRISDLNGGSSPFPPLYNLRKLKMLVLRNCNITGMLPNNLDRLTELKSLDFSFNKITGPIPASFEALRKVDTIYLTGNLLNGSVPSWMLQEGEHIDLSYNKFTPIDVQNIGCELQNTNLFASFSQDNSSNGTVSCLAGVCEKIWFSLHINCGGKEELVNGIKFDGDTNTGKSSLFFQGGENWGFSNTGGFLDDDSSTDDFIALNYSTISIQNHELFTTARATPISLTYYAYCMNNGDYTLSLYFAEIVFTNDKSYKSLGRRIFDVYVQGKLVLKDFNIVDEAGGVGKSFVKKFRISVTNGTIEIRLFWAGKGTHSIPMRGVYGPLISAISVDPDFVPLSKDGNVMVLGLEVGIVVIMLCLMILVQIVLWLRGRSRNKSTLEQELKGFDLGTCSFSLKQMRYATNNFDIANKIGEGGFGPVYKGVLSDGTAIAVKQLSSKSKQGNREFLNELGMISSLQHPNLVKLYGCCIERDQLLLIYEYLENNSLARSLFGSEESQMKLDWRTRHKICIGIARGLAYIHEESRLKIVHRDIKATNILLDKNLNPKISDFGLAKLNEEENTHISTRVAGTFGYMAPEYAMRGYLSDKADVYSFGIVVLEIVSGRRNTSFGTKDDCFYLIDYAYTLKEKDSLQELVDPRLVSKINKREAMRVIDVALQCTNAIAAERPTMSSVVSMLKGNDVVKEVVSDPNISKQDANAMWSQVYRQKRQTTSEISVQSVSPWTPTGSSSTGSHIYPIFKDSKYMEGRK 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37110318 37120728 + Sed0009878.1 Sed05g2503 715129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2503 1010 Pfam Protein tyrosine and serine/threonine kinase 669 938 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2503 1010 SUPERFAMILY Protein kinase-like (PK-like) 651 963 IPR011009 -
Sed05g2503 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase 743 950 - -
Sed05g2503 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 595 - -
Sed05g2503 1010 Pfam Malectin domain 407 590 IPR021720 -
Sed05g2503 1010 ProSiteProfiles Protein kinase domain profile. 667 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2503 1010 Gene3D Ribonuclease Inhibitor 59 200 IPR032675 -
Sed05g2503 1010 Gene3D Ribonuclease Inhibitor 201 269 IPR032675 -
Sed05g2503 1010 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 954 IPR051824 -
Sed05g2503 1010 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515(InterPro)
Sed05g2503 1010 Pfam Leucine Rich Repeat 116 135 IPR001611 GO:0005515(InterPro)
Sed05g2503 1010 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 268 - -
Sed05g2503 1010 CDD STKc_IRAK 673 940 - -
Sed05g2503 1010 Gene3D Phosphorylase Kinase; domain 1 631 742 - -
Sed05g2503 1010 Gene3D - 406 594 - -
Sed05g2503 1010 Gene3D Ribonuclease Inhibitor 270 379 IPR032675 -
Sed05g2503 1010 Pfam Leucine rich repeat 281 341 IPR001611 GO:0005515(InterPro)
Sed05g2503 1010 SUPERFAMILY L domain-like 86 364 - -
Sed05g2503 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2503 1010 Gene3D Transferase(Phosphotransferase) domain 1 743 954 - -
Sed05g2503 1010 SMART serkin_6 667 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2503 1010 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 742 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2503 Sed-Chr5:37110318 Sed05g2506 Sed-Chr5:37142821 5.10E-298 dispersed
Sed05g2502 Sed-Chr5:37094130 Sed05g2503 Sed-Chr5:37110318 0.00E+00 tandem
Sed05g2503 Sed-Chr5:37110318 Sed05g2504 Sed-Chr5:37128156 5.10E-298 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79227 PF07714 PK_Tyr_Ser-Thr 3.90E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2503 - - - 0.0