Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2504 ATGTTTGTGGCTCGGCTCCTCGCCGTCGTTTTTCTCTTGTCTCTCGCTTCCGGCGCCGCTCGGCTCCCAGACGACGAAGTTGAAGCGTTGAGGGAGATCGGAAAGACATTGGGGAAGGGGGACTGGAATTTCGCGGCGGATCCGTGCGGCGGTTTGAACAGCGGTTGGATAACGGATTCTTTCGATACTAATTTCGATAATAATGTCACCTGCAATTGCACCTTTCACGATCATAGCGTCTGTCACGTTACTAGCATTATTCTTAGAGGACAAAGCCTTCCAGGTACTCTGCCACCACAAATAGTGAGGTTGCCTTTTCTACAAGAGCTCAAACTCTCCCGCAACTATCTCAGCGGCCCAATTCCTCCAGAATGGGGTTCAACCAAGCTTGTCAAAATTTCCCTTCTTGGAAATCGACTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCACCACTCTTGAGGAGTTGATACTTGAAATTAATCATTTCTCTGGAAGTTTGCCTCCAGAGCTTGGAGATTTGACAAGTTTATCAAGACTTCTTCTGTCCACAAACAACTTTTCTGGGGAGCTCCCACCATCACTGGGAAGAATTTCCTCAATGACAGACTTTCGAATTAGTGACAATCACTTTACAGGTCCAATACCCAAGTTTATTCAGAATTGGCCGGATCTTGGAACAGTTGTAATTCAAGCAAGCGGGCTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATTTGAGAATCAGTGACTTGAATGGAGGTTCATCACCCTTTCCACCCCTTAATGCTTTGCCAAATTTGAAAACCCTGATCTTGAGGAGTTGCAATATACATGGGATGCTGCCAGACTATTTTATTGGGTTGTCAAATGTGCAAACATTAGACTTAAGCTTCAACAGAATCACTGGACCTATACCTGCCAGCTTTGAAGCTTTGAAACAAGTGGATAGAATATTTTTAACGGGAAACTTGATAAATGGATCAGTGCCTCCTTGGATGCTACAGGATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTGAGAAAAATGGTCATAGCGTTTGTGAATCACGAAGTTTAAACTTGTTTGCAAGCACTTCACAAGACAATAATTCTGGAATAGTTTCATGTTTAGCGGGCGCTTGTAAGAAAACTTGGTACTCTCTCCATATCAACTGCGGTGGGATGGAAGAATTGATCAACGGAACAATCAAGTATGATGGAGACACAAACACTGGCAAGCCATCATTGTTTTTTCAAGGTGGAGATAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATCGCTCAACTGACGACTTTATTGAGTTAAGTTCCTTAGCTCTCTCAATGCCAAATCCTGAATTGTACATGAAGGCACGCATTTCTCCAAACTCTCTTACTTATTATGCATTCTGCATGGGTAATGGAAACTACACACTAAGCCTCCACTTTGCTGAGATAGCATTTACTGGTGACAAATCATACAAAAGCCTTGGCAGACGTGTATTTGATGTATACATTCAGGGAAAGCTCGAGTTGAAGGATTTTAATATTGCAGATGCAGCGGGTGGTGTTGGAAAACCTTTTGTAAAGAAATTCACTGTTGCTGTGACTAATGGTGCAATAGAGATACGCCTATTTTGGACTGGGAGGGGAACAAATGCAATTCCTATAAGAGGAGTTTATGGTCCTCTAATTTCTGCCATTTCAGTTGAACCTGACTTTTTTCTACCATTAGAAGGTGGAAATATCATAATCGCCTTTGTAGCTGTTGGATTTGTGGCTGCTGTGATTCTTGCTATCATCTTGGTTCTTGGAGTCTTTTGGTGGAGATGCGGCCTTGGAAAGAAAAGCACACTTGAACAAGAGTTGAAGGACCTTGATCTAGGAACGGGTTCATTTTCATTAAAACAAATTAAAGCTGCTACTAACAATTTTGAAGCTGCCAATAAGATTGGACACGGTGGTTTTGGTTCTGTTTACAAGGGTGTTCTTGCGGATGGCACTATTATTGCAGTGAAACAACTTTCTTCACAGTCAAAGCAAGGAAATCGCGAATTTTTAAATGAGATAGCCATGATATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTATGGATGTTGTATCGAAGGAGATCAATTGTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTATTCGGACCTGAAGAATATCAACTAAAATTGGATTGGCCAACTAGGCATAAGATTTGTGTTGGTATAGCTAAAGGTTTAGCATATCTTCATGAAGAGTCGAGACTAAAGATTGTTCATCGAGACATCAAAACTACCAATGTTTTGCTCGATAAAAATCTTAACCCTAAGATTTCTGACTTCGGTTTGGCCAAGCTCAATGAAGAAGAAAATACGCACATCAGCACACGGGTTGCTGGAACATTTGGATATATGGCACCAGAATATGCCATGCGAGGCCACTTAACTGACAAAGCAGATGTTTACAGTTTTGGCATTGTGGCATTGGAAATAATCGGTGGTCGAAGCAACACTAGTTTTCAGACCAAGAGTGATTGTTTTTACCTTCTTGACCATGCTAATACCTTACAAGGGAAAGACAATTTACTAGAGCTTGTCGATCCACGATTAGACGGTGAATTCAACAAGAATGAAGCAATGACGATGATTAATATTGCTCTTCTATGCACGAACACCATTGCTTCGAACAGACCTATCATGTCATCTGTGGTGAGCATGCTAGAAGGGAAAGTTCCTGTGAATGTAGTGGTTTCAGATCCTAGTGTCTCAAAACAAGATGCAAATGCAGTGTGTAGCCAAACTAATCGACAATCATTAAACGACGGATAA 2892 41.39 MFVARLLAVVFLLSLASGAARLPDDEVEALREIGKTLGKGDWNFAADPCGGLNSGWITDSFDTNFDNNVTCNCTFHDHSVCHVTSIILRGQSLPGTLPPQIVRLPFLQELKLSRNYLSGPIPPEWGSTKLVKISLLGNRLTGPIPKEIGNITTLEELILEINHFSGSLPPELGDLTSLSRLLLSTNNFSGELPPSLGRISSMTDFRISDNHFTGPIPKFIQNWPDLGTVVIQASGLSGPIPSEIGLLTKLTDLRISDLNGGSSPFPPLNALPNLKTLILRSCNIHGMLPDYFIGLSNVQTLDLSFNRITGPIPASFEALKQVDRIFLTGNLINGSVPPWMLQDGENIDLSYNKFTEKNGHSVCESRSLNLFASTSQDNNSGIVSCLAGACKKTWYSLHINCGGMEELINGTIKYDGDTNTGKPSLFFQGGDNWGFSNTGSFMDDDRSTDDFIELSSLALSMPNPELYMKARISPNSLTYYAFCMGNGNYTLSLHFAEIAFTGDKSYKSLGRRVFDVYIQGKLELKDFNIADAAGGVGKPFVKKFTVAVTNGAIEIRLFWTGRGTNAIPIRGVYGPLISAISVEPDFFLPLEGGNIIIAFVAVGFVAAVILAIILVLGVFWWRCGLGKKSTLEQELKDLDLGTGSFSLKQIKAATNNFEAANKIGHGGFGSVYKGVLADGTIIAVKQLSSQSKQGNREFLNEIAMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLKLDWPTRHKICVGIAKGLAYLHEESRLKIVHRDIKTTNVLLDKNLNPKISDFGLAKLNEEENTHISTRVAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIIGGRSNTSFQTKSDCFYLLDHANTLQGKDNLLELVDPRLDGEFNKNEAMTMINIALLCTNTIASNRPIMSSVVSMLEGKVPVNVVVSDPSVSKQDANAVCSQTNRQSLNDG 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37128156 37140181 + Sed0020384.1 Sed05g2504 715130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2504 963 Gene3D - 393 584 - -
Sed05g2504 963 Gene3D Ribonuclease Inhibitor 187 260 IPR032675 -
Sed05g2504 963 SUPERFAMILY L domain-like 78 355 - -
Sed05g2504 963 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 259 - -
Sed05g2504 963 Gene3D Ribonuclease Inhibitor 25 186 IPR032675 -
Sed05g2504 963 ProSiteProfiles Protein kinase domain profile. 657 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2504 963 Gene3D Ribonuclease Inhibitor 261 368 IPR032675 -
Sed05g2504 963 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
Sed05g2504 963 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515(InterPro)
Sed05g2504 963 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 394 585 - -
Sed05g2504 963 Pfam Malectin domain 396 580 IPR021720 -
Sed05g2504 963 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 944 IPR051824 -
Sed05g2504 963 SUPERFAMILY Protein kinase-like (PK-like) 641 942 IPR011009 -
Sed05g2504 963 ProSitePatterns Protein kinases ATP-binding region signature. 663 685 IPR017441 GO:0005524(InterPro)
Sed05g2504 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2504 963 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Sed05g2504 963 Gene3D Transferase(Phosphotransferase) domain 1 733 940 - -
Sed05g2504 963 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Sed05g2504 963 Gene3D Phosphorylase Kinase; domain 1 625 732 - -
Sed05g2504 963 Pfam Leucine rich repeat 272 332 IPR001611 GO:0005515(InterPro)
Sed05g2504 963 CDD STKc_IRAK 663 930 - -
Sed05g2504 963 SMART serkin_6 657 921 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2504 963 Pfam Protein tyrosine and serine/threonine kinase 659 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2501 Sed-Chr5:37063857 Sed05g2504 Sed-Chr5:37128156 0.00E+00 dispersed
Sed05g2504 Sed-Chr5:37128156 Sed05g2506 Sed-Chr5:37142821 0.00E+00 dispersed
Sed05g2503 Sed-Chr5:37110318 Sed05g2504 Sed-Chr5:37128156 5.10E-298 tandem
Sed05g2504 Sed-Chr5:37128156 Sed05g2505 Sed-Chr5:37128156 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79228 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2504 - - - 0.0