Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2505 ATGTTTGTGGCTCGGCTCCTCGCCGTCGTTTTTCTCTTGTCTCTCGCTTCCGGCGCCGCTCGGCTCCCAGACGACGAAGTTGAAGCGTTGAGGGAGATCGGAAAGACATTGGGGAAGGGGGACTGGAATTTCGCGGCGGATCCGTGCGGCGGTTTGAACAGCGGTTGGATAACGGATTCTTTCGATACTAATTTCGATAATAATGTCACCTGCAATTGCACCTTTCACGATCATAGCGTCTGTCACGTTACTAGCATTATTCTTAGAGGACAAAGCCTTCCAGGTACTCTGCCACCACAAATAGTGAGGTTGCCTTTTCTACAAGAGCTCAAACTCTCCCGCAACTATCTCAGCGGCCCAATTCCTCCAGAATGGGGTTCAACCAAGCTTGTCAAAATTTCCCTTCTTGGAAATCGACTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCACCACTCTTGAGGAGTTGATACTTGAAATTAATCATTTCTCTGGAAGTTTGCCTCCAGAGCTTGGAGATTTGACAAGTTTATCAAGACTTCTTCTGTCCACAAACAACTTTTCTGGGGAGCTCCCACCATCACTGGGAAGAATTTCCTCAATGACAGACTTTCGAATTAGTGACAATCACTTTACAGGTCCAATACCCAAGTTTATTCAGAATTGGCCGGATCTTGGAACAGTTGTAATTCAAGCAAGCGGGCTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATTTGAGAATCAGTGACTTGAATGGAGGTTCATCACCCTTTCCACCCCTTAATGCTTTGCCAAATTTGAAAACCCTGATCTTGAGGAGTTGCAATATACATGGGATGCTGCCAGACTATTTTATTGGGTTGTCAAATGTGCAAACATTAGACTTAAGCTTCAACAGAATCACTGGACCTATACCTGCCAGCTTTGAAGCTTTGAAACAAGTGGATAGAATATTTTTAACGGGAAACTTGATAAATGGATCAGTGCCTCCTTGGATGCTACAGGATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTGAGAAAAATGGTCATAGCGTTTGTGAATCACGAAGTTTAAACTTGTTTGCAAGCACTTCACAAGACAATAATTCTGGAATAGTTTCATGTTTAGCGGGCGCTTGTAAGAAAACTTGGTACTCTCTCCATATCAACTGCGGTGGGATGGAAGAATTGATCAACGGAACAATCAAGTATGATGGAGACACAAACACTGGCAAGCCATCATTGTTTTTTCAAGGTGGAGATAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATCGCTCAACTGACGACTTTATTGAGTTAAGTTCCTTAGCTCTCTCAATGCCAAATCCTGAATTGTACATGAAGGCACGCATTTCTCCAAACTCTCTTACTTATTATGCATTCTGCATGGGTAATGGAAACTACACACTAAGCCTCCACTTTGCTGAGATAGCATTTACTGGTGACAAATCATACAAAAGCCTTGGCAGACGTGTATTTGATGTATACATTCAGGGAAAGCTCGAGTTGAAGGATTTTAATATTGCAGATGCAGCGGGTGGTGTTGGAAAACCTTTTGTAAAGAAATTCACTGTTGCTGTGACTAATGGTGCAATAGAGATACGCCTATTTTGGACTGGGAGGGGAACAAATGCAATTCCTATAAGAGGAGTTTATGGTCCTCTAATTTCTGCCATTTCAGTTGAACCTGACTTTTTTCTACCATTAGAAGGTGGAAATATCATAATCGCCTTTGTAGCTGTTGGATTTGTGGCTGCTGTGATTCTTGCTATCATCTTGGTTCTTGGAGTCTTTTGGTGGAGATGCGGCCTTGGAAAGAAAAGCACACTTGAACAAGAGTTGAAGGACCTTGATCTAGGAACGGGTTCATTTTCATTAAAACAAATTAAAGCTGCTACTAACAATTTTGAAGCTGCCAATAAGATTGGACACGGTGGTTTTGGTTCTGTTTACAAGGGTGTTCTTGCGGATGGCACTATTATTGCAGTGAAACAACTTTCTTCACAGTCAAAGCAAGGAAATCGCGAATTTTTAAATGAGATAGCCATGATATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTATGGATGTTGTATCGAAGGAGATCAATTGTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTATTCGGTAAAAATATTTCCTTACTGCTTTGGACTGACATCGATACTCCAAAAATATTTGAACATAGTGGCGATGACATCAATGATTGTAATAAGCATGGCTGCAAATTTGGTTTATTGTAG 2346 41.43 MFVARLLAVVFLLSLASGAARLPDDEVEALREIGKTLGKGDWNFAADPCGGLNSGWITDSFDTNFDNNVTCNCTFHDHSVCHVTSIILRGQSLPGTLPPQIVRLPFLQELKLSRNYLSGPIPPEWGSTKLVKISLLGNRLTGPIPKEIGNITTLEELILEINHFSGSLPPELGDLTSLSRLLLSTNNFSGELPPSLGRISSMTDFRISDNHFTGPIPKFIQNWPDLGTVVIQASGLSGPIPSEIGLLTKLTDLRISDLNGGSSPFPPLNALPNLKTLILRSCNIHGMLPDYFIGLSNVQTLDLSFNRITGPIPASFEALKQVDRIFLTGNLINGSVPPWMLQDGENIDLSYNKFTEKNGHSVCESRSLNLFASTSQDNNSGIVSCLAGACKKTWYSLHINCGGMEELINGTIKYDGDTNTGKPSLFFQGGDNWGFSNTGSFMDDDRSTDDFIELSSLALSMPNPELYMKARISPNSLTYYAFCMGNGNYTLSLHFAEIAFTGDKSYKSLGRRVFDVYIQGKLELKDFNIADAAGGVGKPFVKKFTVAVTNGAIEIRLFWTGRGTNAIPIRGVYGPLISAISVEPDFFLPLEGGNIIIAFVAVGFVAAVILAIILVLGVFWWRCGLGKKSTLEQELKDLDLGTGSFSLKQIKAATNNFEAANKIGHGGFGSVYKGVLADGTIIAVKQLSSQSKQGNREFLNEIAMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGKNISLLLWTDIDTPKIFEHSGDDINDCNKHGCKFGLL 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37128156 37140181 + Sed0020384.2 Sed05g2505 715131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2505 781 Gene3D Ribonuclease Inhibitor 263 368 IPR032675 -
Sed05g2505 781 ProSitePatterns Protein kinases ATP-binding region signature. 663 685 IPR017441 GO:0005524(InterPro)
Sed05g2505 781 Gene3D Ribonuclease Inhibitor 25 185 IPR032675 -
Sed05g2505 781 SUPERFAMILY Protein kinase-like (PK-like) 641 748 IPR011009 -
Sed05g2505 781 Pfam Malectin domain 396 580 IPR021720 -
Sed05g2505 781 SMART tyrkin_6 657 778 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Sed05g2505 781 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 752 IPR051824 -
Sed05g2505 781 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Sed05g2505 781 Pfam Protein tyrosine and serine/threonine kinase 659 743 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2505 781 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 394 585 - -
Sed05g2505 781 Pfam Leucine rich repeat 272 332 IPR001611 GO:0005515(InterPro)
Sed05g2505 781 Gene3D Phosphorylase Kinase; domain 1 625 732 - -
Sed05g2505 781 SUPERFAMILY L domain-like 78 355 - -
Sed05g2505 781 Gene3D Ribonuclease Inhibitor 186 262 IPR032675 -
Sed05g2505 781 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 259 - -
Sed05g2505 781 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
Sed05g2505 781 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515(InterPro)
Sed05g2505 781 ProSiteProfiles Protein kinase domain profile. 657 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2505 781 Gene3D - 393 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2505 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2505 Sed-Chr5:37128156 Sed05g2507 Sed-Chr5:37165072 1.80E-181 dispersed
Sed05g2504 Sed-Chr5:37128156 Sed05g2505 Sed-Chr5:37128156 0.00E+00 tandem
Sed05g2505 Sed-Chr5:37128156 Sed05g2506 Sed-Chr5:37142821 6.70E-229 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000046 4 29 6 9 6 2 3 2 2 7 5 2 11 7 9 9 2 7 5 2 7 7 10 9 9 10 6 5 16 25 233
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79229 PF11721 Malectin 2.90E-42 CL0202 Sed PK