Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2506 ATGTTCCTGCCGCGATTCCTCGCGGCCGCCGTTGTTCTCTCTTGTCTGGCTGCCGGCGCCGCTCAGCTGCCGGACGACGAAGTTGAGGCGTTGAGGGAGATCGGAAAGACAATGGGGAAGAGGGACTGGAATTTCACGGCGGATCCGTGCGGCGGTTTGAGCAGCGGTTGGATAACGGATTTGGAATATGCGGTGGACCCCAATTTTGCTAATAATATCACCTGCAACTGCACCTTTCACGCCGATACCCTCTGTCACGTGACTCGCATGATTCTAAGGGGACAAAACCTTCCTGGTACTCTGCCACCGCAATTACACAGGCTGCCTTTCCTAGTTGAAATTGATTTCGCCCGTAATTATCTTAGCGGCCCAATTCCCCCACAATGGGGTTTCACCAAGCTTGTCAACGTTTCCCTTCTTGGAAACCGACTGACGGGTCCAATCCCAAAAGAGATCGGAAACATCACCACTCTCGTGGAGTTAAACCTCGAAGTTAATCAATTGTCTGGAAGTCTGCCTCCTGAACTTGGAAATCTGCCCACTTTATCAAGATTACTTCTTACCTCAAACAACTTTACTGGGGAGATTCCACCTTCACTAGGAAAGGTCCCATTGTTGGACCTTCGAATTAGTGATAATCAGTTCACAGGGCCAATACCTAAGTTCATTATGAATTGGACGAATCTCGTAAAATTAATTATCCAGGGAAGCGGATTGAGTGGCCCAATTCCTTCTGAAATTGGACTTTTAACAAAATTAACTGATTTGAGAATTAGTGACTTGAATGGAGGCTCATCGCCCTTTCCACCCGTTAATACTTTGACGAGTTTGTCAACTCTAGTATTGAGGAGTTGTAATATAGATGGACCACTGCCTGACAATGTCAATGGGTTGGCAGGCGTGCTAACCATATATTTAACTGGAAACTTGATAAATGGATCAGTGCCTCCTTGGATGCTACAAGATGGAGAAAGTATCGATCTCTCTTACAACAAATTTACTGAGAAAAATGCTCAGATAATTGGTTGCGAATCACGAAGTATAAATCTGTTTGCGAGCTCTGCACAAGACCATAACTCTGGATCAGTTTCATGCTTAGCGGGAACTTGTGAAAAAACTTGGTACTCTCTCCATATCAACTGTGGTGGGGAAGAAGAATTTATTAACGAAACAATCAAGTATGAGGGAGACACAAATACTGGAAAATCATCATTGTTTTTTCAAGGTGGGGAAAATTGGGCATTTAGCAACACTGGTAATTTTATGGACAACGTTCGCTCAACACAGGACTTTATCGTATTTAATTCAACTCCTCTCTCATTCCCAAATCCTGAACTATACACAACGGCACGCATTTCCCCAATTTCTCTTGCTTACTATGCGTATTGCATGGGTAATGGAAAGTACACACTAAGCCTCCATTTTTCCGAGATCGTGTTTACTGATGACAACTCTTACAAAAGCCTTGGCAGACGTATATTTGATGTCTACGTTCAGGGAAAGTTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTATTGGAAAACCTCTTGTAAAGAAATTCCCTATTTCTGTGACTACTGGTACTATAGAGATCCGCCTCTTTTGGGCTGGGAAGGGGACAAATGCAATCCCTATAAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGACCCTGACTTTGTGACACCACCAGAAGGTGGCCGAATTACCATTTCTTCTGGGCCAATGGTCGGAGCCGTGGTTGGAACTGTGGTTGTTGTGGTCTTTTTCATCATCTTAGTTCTTGGAGTCTCATGTTGGAGAGCTTGCTTACCAAAGAAAAGCACAGTTGAACACGAGTTGAAGGGCCTAAATCTAGAAACTGGTTCATTTTCATTAAAACACATTAAAGCTGCCACTAAAAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTCGGTCCAGTTTACAAGGGTGTTCTTGGCGATGGTACTGTCATTGCAGTAAAACAACTTTCTTCAAAGTCAAAGCAAGGAAATCGCGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAACACCCTAATCTCGTGAAGCTTTATGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATATACGAGTATCTGGAAAATAATAGTCTTGCTCGGGCCTTATTCGGACCTGAGAAATGTCAGTTAAATTTGGATTGGCAAACGAGGCACAAGATTTGTGTTGATATAGCTAAAGGCTTAGCATATCTTCATGAGGAATCAAGATTAAAGATTATTCATCGGGACATCAAAGCTACCAATGTTCTACTAGATAAAGATCTCAACCCCAAGATTTCTGACTTTGGTTTGGCCAAGCTACATGAAGAAGGAAATACACATATCAGCACACGGATTGCCGGAACCTATGGATATATGGCACCAGAATACGCTATGCGAGGCCACTTAACTGACAAAGCAGATATATATAGCTTTGGCATTGTGGCATTAGAAATAGTCGGTGGTCAAAGCAACACAAGTTTTCAAACCAATGATGATTGCGTTTACCTTCTTGACCATGCTAACAGTTTACATGAGAAAGGCAGCTTGCTCGAGCTTGTCGATCCACAGTTAGGTTCTGAATTCGATAAGAAAGAGGCAATGGCGATGATCAATACTGCTCTGCAATGCACAAACATCATTGCTTCAAATAGACCTGCCATGTCATTGGTGGTGAGCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGGTGGCTTCAGATCCAAGTGTCTCAAAACATGATGTAAATGCAGTGTGGAGCCAAATGTATTGCCAGAGAGGGCAAACGACAAATGAAATCCCGAAGAAAAGTACGTTGACGGATGGACCGGGAACTGGTTCTTCGAGTACTGGTAGTGATGTCTATAACCATCTTTGA 2931 43.06 MFLPRFLAAAVVLSCLAAGAAQLPDDEVEALREIGKTMGKRDWNFTADPCGGLSSGWITDLEYAVDPNFANNITCNCTFHADTLCHVTRMILRGQNLPGTLPPQLHRLPFLVEIDFARNYLSGPIPPQWGFTKLVNVSLLGNRLTGPIPKEIGNITTLVELNLEVNQLSGSLPPELGNLPTLSRLLLTSNNFTGEIPPSLGKVPLLDLRISDNQFTGPIPKFIMNWTNLVKLIIQGSGLSGPIPSEIGLLTKLTDLRISDLNGGSSPFPPVNTLTSLSTLVLRSCNIDGPLPDNVNGLAGVLTIYLTGNLINGSVPPWMLQDGESIDLSYNKFTEKNAQIIGCESRSINLFASSAQDHNSGSVSCLAGTCEKTWYSLHINCGGEEEFINETIKYEGDTNTGKSSLFFQGGENWAFSNTGNFMDNVRSTQDFIVFNSTPLSFPNPELYTTARISPISLAYYAYCMGNGKYTLSLHFSEIVFTDDNSYKSLGRRIFDVYVQGKLELKDFNIADAAGGIGKPLVKKFPISVTTGTIEIRLFWAGKGTNAIPIRGVYGPLISAISVDPDFVTPPEGGRITISSGPMVGAVVGTVVVVVFFIILVLGVSCWRACLPKKSTVEHELKGLNLETGSFSLKHIKAATKNFDAANKIGEGGFGPVYKGVLGDGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPNLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEKCQLNLDWQTRHKICVDIAKGLAYLHEESRLKIIHRDIKATNVLLDKDLNPKISDFGLAKLHEEGNTHISTRIAGTYGYMAPEYAMRGHLTDKADIYSFGIVALEIVGGQSNTSFQTNDDCVYLLDHANSLHEKGSLLELVDPQLGSEFDKKEAMAMINTALQCTNIIASNRPAMSLVVSMLEGKVAVKEVASDPSVSKHDVNAVWSQMYCQRGQTTNEIPKKSTLTDGPGTGSSSTGSDVYNHL 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37142821 37155929 + Sed0005426.1 Sed05g2506 715132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2506 976 Gene3D Phosphorylase Kinase; domain 1 607 717 - -
Sed05g2506 976 FunFam Putative LRR receptor-like serine/threonine-protein kinase 718 925 - -
Sed05g2506 976 CDD STKc_IRAK 648 915 - -
Sed05g2506 976 SMART serkin_6 642 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2506 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2506 976 Pfam Malectin domain 376 560 IPR021720 -
Sed05g2506 976 Gene3D Ribonuclease Inhibitor 42 203 IPR032675 -
Sed05g2506 976 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 24 262 - -
Sed05g2506 976 SUPERFAMILY L domain-like 70 333 - -
Sed05g2506 976 Gene3D Transferase(Phosphotransferase) domain 1 718 928 - -
Sed05g2506 976 Gene3D Ribonuclease Inhibitor 204 360 IPR032675 -
Sed05g2506 976 Pfam Protein tyrosine and serine/threonine kinase 645 862 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2506 976 MobiDBLite consensus disorder prediction 948 976 - -
Sed05g2506 976 ProSiteProfiles Protein kinase domain profile. 642 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2506 976 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 928 IPR051824 -
Sed05g2506 976 Gene3D - 374 564 - -
Sed05g2506 976 SUPERFAMILY Protein kinase-like (PK-like) 626 932 IPR011009 -
Sed05g2506 976 Pfam Leucine Rich Repeat 182 202 IPR001611 GO:0005515(InterPro)
Sed05g2506 976 Pfam Leucine Rich Repeat 158 179 IPR001611 GO:0005515(InterPro)
Sed05g2506 976 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 374 565 - -
Sed05g2506 976 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 611 717 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2502 Sed-Chr5:37094130 Sed05g2506 Sed-Chr5:37142821 0.00E+00 dispersed
Sed05g2503 Sed-Chr5:37110318 Sed05g2506 Sed-Chr5:37142821 5.10E-298 dispersed
Sed05g2504 Sed-Chr5:37128156 Sed05g2506 Sed-Chr5:37142821 0.00E+00 dispersed
Sed05g2506 Sed-Chr5:37142821 Sed05g2510 Sed-Chr5:37165072 2.20E-277 dispersed
Sed05g2505 Sed-Chr5:37128156 Sed05g2506 Sed-Chr5:37142821 6.70E-229 tandem
Sed05g2506 Sed-Chr5:37142821 Sed05g2507 Sed-Chr5:37165072 1.30E-269 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79230 PF00069 Pkinase 4.20E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2506 - - - 0.0