Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2507 ATGTTGAAAACAAGAAATATAAACGTTATGGCTTTCTTCGTTGTTTCTTTCGTTACCAGTGTTGCTTTTGGATTTCCTATTTTGCCTCGTGAGGAAGTGGAAGGATTGAAGCATGTGGCAGAGACATTGGGAAAGAGAGATTGGAATTTCAGTGTAAATCCATGCAGTGAACAGTTCGGTTGGATATCTAAAAACGACGACATTGTACGTTTCAAAAATAATGTCACCTGCAATTGCACATTTCTTAATGCTACTCTCTGCCACGTCACCCATATAATTTTGAATGGGCAGAGTTTGGCAGGAACGCTTCCATTGCAGCTCTTTAGACTGCCCTACCTTCAGGAACTTGATCTCTCTCGGAACTATCTCAGCGGCGAAATTCCTCCACAATGGGCCTCCACAAAACTTCTCCGACTTTTATTGCTCGGAAATCGCTTGACTGGTTCCATTCCGCAAGAGATTGGAAACATTACTACTCTTACAAAGTTGAACTTAGATGTCAATCATCTATCAGGAAGGTTACCTTCAAGCCTTGGAAATTTGTTGAACTTGGAATTATTACATCTTTCCTCGAATAATTTTACTGGAAAACTACCAACTTCTCTGGGAATGCTGATCTCATTGATCTCATTTCGAATCTGTGACAATGACTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGATAAATGTGGAGAGAATAAGGATTCAAGCAAGTGGATTGAGCGGGCCTCTTCCTTCTGAAATCAGACTCCTGACCAAATTAACTGACTTAAGAATCAGTGACTTGAATGGGCCTTCATCACCCTTTCCGCCTCTTAATAATTTGACCAATATTGGAAGATTAATATTAAGAAGTTGCAATATCACTGGATTGCTGCCCGAGTATTTAGATGGGATGAAATCCTTGGAAATCTTAGACCTCAGCTATAACAAATTAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGCGAACACAGTGAACATATTCTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAGTGGATGCTGCTTAGAGGACGTAGCATTGATCTCTCTTACAATAAATTTAAACCACTATCTACGGGCTGTCAATCACGAGATACGAACTTATTTGCGAGCTCTGCATTGGACAATAATTCCAATCTTGTTTCTTGTTTGGGGGACCAAATTTGTCCAGAGAATTTATATCATCTCCATATAAATTGTGGTGGCAAAGAAGAAGTAATTAATGGTACAAAGTTTGAAGGAGATGAAAACACAGGCATGCCATCTGTGTTTGTCTCGAGCAATGCTTATTGGGGCTTCAGCAACACTGGAATATTTTTGGATGATAGTCGTCTTTTAGTTGACTATATTGAACTAAATTCATCAGAACTTCGTATGGTAGATTCTAAACTATATGAGAATGCTCGTATTTCTCCAATGTCTCTTACATATTATGTGTACTGTATGGGGAATGGAAACTACACGTTAAGCCTCCATTTTGCTGAAATTACTTTTACTAATGGTAAAACTTTTAGCAGCCTAGGAAGACGAATTTTTGATGTTTATGTGCAGGGGCGGCTAGTGTTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAATCTGTGACAAAAAAGATTTCCACTGTTGTTACTAGCAATACCATAGAGATTCGTTTTCATTGGGCTGGGAAGGGGACAACGTCTATCCCTTTTGGTGGAGTCTATGGCCCTCTGATATCGGCCATTTCGATAGAGCCTGACTTTGAGCCTCCATCAAAAGGTCGAAGTCCCTTACCAGTTGGTGCAATTCTGGGAATTGTAGCTGCAGTTGTCCTTGTTATCATTTCAATTCTTGGAATTTTATGGTGGAGAGGTTGCCTTGGCCAGAAAAGTACATTTCAAAAAGATCTCAAAAGTCTAGATCTGCAAACGGGCTCATTCACGTTACGTCAAATCAAAGCTGCCACTAATAACTTTGACATCTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGGTTTCTCTTGGATGGTACCATAATTGCAGTGAAGCAACTTTCTTCTAAGTCAAAGCAAGGAATCCACGAATTTGTGAATGAGATAGGCATGATATCTGCTTTGCACCACCCACACCTAGTTAGACTTTATGGATGTTGTACCGAAGAAAATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAGGCTATGTTTGGAAGTCGATTGAAATTAGAATGGCCAACAAGACAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTATCTTCACGAGGAATCAAGAGTGAAGATTGTTCATAGAGATATCAAAGCGACTAATGTATTGTTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCTAAGCTTGAAGAAGAAGGAAATACCCACATCAGTACACGAATTGCTGGAACTTTTGGATATATTGCACCAGAATATGCAATGCGAGGCTACTTAACTGACAAAGCGGATGTTTATAGCTTTGGCATTGTGGCCTTGGAAATAGTTAGCGGAAGGAGCAATACTACATACCGATCAAAGGACGATTGCTTTTATCTGCTGGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTGGTTGATCCAAGGTTAGGGTCCAACTTCAACCAAGGGGAGGCAATGACTATGATCAATGTTGCTCTTCATTGCACCAATGTTTCTTCTACAGAAAGACCTTCCATGTCTTTAGTGGTGGCCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGTTGGTTTCTGCTCCAAATGAGACAAGAGCAAAGATGGGTGCTATGTGGACCATTTTGGAGAAGAGCTTGAAACAAACTGACAATGAGAACCAGGCAGGGGTTATCTCTATGGACATGTCATGTACCAATACTTCTTCAACATCAATGAGTAGAAACTAG 2970 39.93 MLKTRNINVMAFFVVSFVTSVAFGFPILPREEVEGLKHVAETLGKRDWNFSVNPCSEQFGWISKNDDIVRFKNNVTCNCTFLNATLCHVTHIILNGQSLAGTLPLQLFRLPYLQELDLSRNYLSGEIPPQWASTKLLRLLLLGNRLTGSIPQEIGNITTLTKLNLDVNHLSGRLPSSLGNLLNLELLHLSSNNFTGKLPTSLGMLISLISFRICDNDFEGQIPSFIQNWINVERIRIQASGLSGPLPSEIRLLTKLTDLRISDLNGPSSPFPPLNNLTNIGRLILRSCNITGLLPEYLDGMKSLEILDLSYNKLSGQIPTSFHSLANTVNIFLTGNLLNGSVPEWMLLRGRSIDLSYNKFKPLSTGCQSRDTNLFASSALDNNSNLVSCLGDQICPENLYHLHINCGGKEEVINGTKFEGDENTGMPSVFVSSNAYWGFSNTGIFLDDSRLLVDYIELNSSELRMVDSKLYENARISPMSLTYYVYCMGNGNYTLSLHFAEITFTNGKTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKSVTKKISTVVTSNTIEIRFHWAGKGTTSIPFGGVYGPLISAISIEPDFEPPSKGRSPLPVGAILGIVAAVVLVIISILGILWWRGCLGQKSTFQKDLKSLDLQTGSFTLRQIKAATNNFDISNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGIHEFVNEIGMISALHHPHLVRLYGCCTEENQLLLVYEYMENNSLAQAMFGSRLKLEWPTRQKICIGIAKGLAYLHEESRVKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLGSNFNQGEAMTMINVALHCTNVSSTERPSMSLVVAMLEGKVAVKELVSAPNETRAKMGAMWTILEKSLKQTDNENQAGVISMDMSCTNTSSTSMSRN 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37165072 37176631 + Sed0010437.1 Sed05g2507 715133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2507 989 Gene3D Transferase(Phosphotransferase) domain 1 737 949 - -
Sed05g2507 989 Pfam Malectin domain 401 584 IPR021720 -
Sed05g2507 989 Gene3D Ribonuclease Inhibitor 267 396 IPR032675 -
Sed05g2507 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2507 989 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Sed05g2507 989 Gene3D - 398 588 - -
Sed05g2507 989 Pfam Protein tyrosine and serine/threonine kinase 663 927 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2507 989 Pfam Leucine Rich Repeat 113 131 IPR001611 GO:0005515(InterPro)
Sed05g2507 989 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Sed05g2507 989 Pfam Leucine Rich Repeat 160 181 IPR001611 GO:0005515(InterPro)
Sed05g2507 989 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 941 - -
Sed05g2507 989 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 943 IPR051824 -
Sed05g2507 989 Gene3D Ribonuclease Inhibitor 199 266 IPR032675 -
Sed05g2507 989 Gene3D Ribonuclease Inhibitor 45 198 IPR032675 -
Sed05g2507 989 ProSiteProfiles Protein kinase domain profile. 661 939 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2507 989 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Sed05g2507 989 Gene3D Phosphorylase Kinase; domain 1 629 736 - -
Sed05g2507 989 SMART serkin_6 661 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2507 989 SUPERFAMILY L domain-like 71 403 - -
Sed05g2507 989 SUPERFAMILY Protein kinase-like (PK-like) 646 930 IPR011009 -
Sed05g2507 989 Pfam Leucine rich repeat 282 338 IPR001611 GO:0005515(InterPro)
Sed05g2507 989 PRINTS Leucine-rich repeat signature 301 314 - -
Sed05g2507 989 PRINTS Leucine-rich repeat signature 113 126 - -
Sed05g2507 989 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 589 - -
Sed05g2507 989 CDD STKc_IRAK 667 931 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2505 Sed-Chr5:37128156 Sed05g2507 Sed-Chr5:37165072 1.80E-181 dispersed
Sed05g2507 Sed-Chr5:37165072 Sed05g2509 Sed-Chr5:37165072 0.00E+00 dispersed
Sed05g2506 Sed-Chr5:37142821 Sed05g2507 Sed-Chr5:37165072 1.30E-269 tandem
Sed05g2507 Sed-Chr5:37165072 Sed05g2508 Sed-Chr5:37165072 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79231 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2507 - - - 0.0