Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2508 ATGTTGAAAACAAGAAATATAAACGTTATGGCTTTCTTCGTTGTTTCTTTCGTTACCAGTGTTGCTTTTGGATTTCCTATTTTGCCTCGTGAGGAAGTGGAAGGATTGAAGCATGTGGCAGAGACATTGGGAAAGAGAGATTGGAATTTCAGTGTAAATCCATGCAGTGAACAGTTCGGTTGGATATCTAAAAACGACGACATTGTACGTTTCAAAAATAATGTCACCTGCAATTGCACATTTCTTAATGCTACTCTCTGCCACGTCACCCATATAATTTTGAATGGGCAGAGTTTGGCAGGAACGCTTCCATTGCAGCTCTTTAGACTGCCCTACCTTCAGGAACTTGATCTCTCTCGGAACTATCTCAGCGGCGAAATTCCTCCACAATGGGCCTCCACAAAACTTCTCCGACTTTTATTGCTCGGAAATCGCTTGACTGGTTCCATTCCGCAAGAGATTGGAAACATTACTACTCTTACAAAGTTGAACTTAGATGTCAATCATCTATCAGGAAGGTTACCTTCAAGCCTTGGAAATTTGTTGAACTTGGAATTATTACATCTTTCCTCGAATAATTTTACTGGAAAACTACCAACTTCTCTGGGAATGCTGATCTCATTGATCTCATTTCGAATCTGTGACAATGACTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGATAAATGTGGAGAGAATAAGGATTCAAGCAAGTGGATTGAGCGGGCCTCTTCCTTCTGAAATCAGACTCCTGACCAAATTAACTGACTTAAGAATCAGTGACTTGAATGGGCCTTCATCACCCTTTCCGCCTCTTAATAATTTGACCAATATTGGAAGATTAATATTAAGAAGTTGCAATATCACTGGATTGCTGCCCGAGTATTTAGATGGGATGAAATCCTTGGAAATCTTAGACCTCAGCTATAACAAATTAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGCGAACACAGTGAACATATTCTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAGTGGATGCTGCTTAGAGGACGTAGCATTGATCTCTCTTACAATAAATTTAAACCACTATCTACGGGCTGTCAATCACGAGATACGAACTTATTTGCGAGCTCTGCATTGGACAATAATTCCAATCTTGTTTCTTGTTTGGGGGACCAAATTTGTCCAGAGAATTTATATCATCTCCATATAAATTGTGGTGGCAAAGAAGAAGTAATTAATGGTACAAAGTTTGAAGGAGATGAAAACACAGGCATGCCATCTGTGTTTGTCTCGAGCAATGCTTATTGGGGCTTCAGCAACACTGGAATATTTTTGGATGATAGTCGTCTTTTAGTTGACTATATTGAACTAAATTCATCAGAACTTCGTATGGTAGATTCTAAACTATATGAGAATGCTCGTATTTCTCCAATGTCTCTTACATATTATGTGTACTGTATGGGGAATGGAAACTACACGTTAAGCCTCCATTTTGCTGAAATTACTTTTACTAATGGTAAAACTTTTAGCAGCCTAGGAAGACGAATTTTTGATGTTTATGTGCAGGGGCGGCTAGTGTTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAATCTGTGACAAAAAAGATTTCCACTGTTGTTACTAGCAATACCATAGAGATTCGTTTTCATTGGGCTGGGAAGGGGACAACGTCTATCCCTTTTGGTGGAGTCTATGGCCCTCTGATATCGGCCATTTCGATAGAGCCTGACTTTGAGCCTCCATCAAAAGGTCGAAGTCCCTTACCAGTTGGTGCAATTCTGGGAATTGTAGCTGCAGTTGTCCTTGTTATCATTTCAATTCTTGGAATTTTATGGTGGAGAGGTTGCCTTGGCCAGAAAAGTACATTTCAAAAAGATCTCAAAAGTCTAGATCTGCAAACGGGCTCATTCACGTTACGTCAAATCAAAGCTGCCACTAATAACTTTGACATCTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGGTTTCTCTTGGATGGTACCATAATTGCAGTGAAGCAACTTTCTTCTAAGTCAAAGCAAGGAATCCACGAATTTGTGAATGAGATAGGCATGATATCTGCTTTGCACCACCCACACCTAGTTAGACTTTATGGATGTTGTACCGAAGAAAATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAGGCTATGTTTGGACCTGAAGGAAGTCGATTGAAATTAGAATGGCCAACAAGACAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTATCTTCACGAGGAATCAAGAGTGAAGATTGTTCATAGAGATATCAAAGCGACTAATGTATTGTTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCTAAGCTTGAAGAAGAAGGAAATACCCACATCAGTACACGAATTGCTGGAACTTTTGGATATATTGCACCAGAATATGCAATGCGAGGCTACTTAACTGACAAAGCGGATGTTTATAGCTTTGGCATTGTGGCCTTGGAAATAGTTAGCGGAAGGAGCAATACTACATACCGATCAAAGGACGATTGCTTTTATCTGCTGGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTGGTTGATCCAAGGTTAGGGTCCAACTTCAACCAAGGGGAGGCAATGACTATGATCAATGTTGCTCTTCATTGCACCAATGTTTCTTCTACAGAAAGACCTTCCATGTCTTTAGTGGTGGCCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGTTGGTTTCTGCTCCAAATGAGACAAGAGCAAAGATGGGTGCTATGTGGACCATTTTGGAGAAGAGCTTGAAACAAACTGACAATGAGAACCAGGCAGGGGTTATCTCTATGGACATGTCATGTACCAATACTTCTTCAACATCAATGAGTAGAAACTAG 2979 39.98 MLKTRNINVMAFFVVSFVTSVAFGFPILPREEVEGLKHVAETLGKRDWNFSVNPCSEQFGWISKNDDIVRFKNNVTCNCTFLNATLCHVTHIILNGQSLAGTLPLQLFRLPYLQELDLSRNYLSGEIPPQWASTKLLRLLLLGNRLTGSIPQEIGNITTLTKLNLDVNHLSGRLPSSLGNLLNLELLHLSSNNFTGKLPTSLGMLISLISFRICDNDFEGQIPSFIQNWINVERIRIQASGLSGPLPSEIRLLTKLTDLRISDLNGPSSPFPPLNNLTNIGRLILRSCNITGLLPEYLDGMKSLEILDLSYNKLSGQIPTSFHSLANTVNIFLTGNLLNGSVPEWMLLRGRSIDLSYNKFKPLSTGCQSRDTNLFASSALDNNSNLVSCLGDQICPENLYHLHINCGGKEEVINGTKFEGDENTGMPSVFVSSNAYWGFSNTGIFLDDSRLLVDYIELNSSELRMVDSKLYENARISPMSLTYYVYCMGNGNYTLSLHFAEITFTNGKTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKSVTKKISTVVTSNTIEIRFHWAGKGTTSIPFGGVYGPLISAISIEPDFEPPSKGRSPLPVGAILGIVAAVVLVIISILGILWWRGCLGQKSTFQKDLKSLDLQTGSFTLRQIKAATNNFDISNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGIHEFVNEIGMISALHHPHLVRLYGCCTEENQLLLVYEYMENNSLAQAMFGPEGSRLKLEWPTRQKICIGIAKGLAYLHEESRVKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLGSNFNQGEAMTMINVALHCTNVSSTERPSMSLVVAMLEGKVAVKELVSAPNETRAKMGAMWTILEKSLKQTDNENQAGVISMDMSCTNTSSTSMSRN 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37165072 37176631 + Sed0010437.2 Sed05g2508 715134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2508 992 Pfam Protein tyrosine and serine/threonine kinase 663 930 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2508 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2508 992 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 946 IPR051824 -
Sed05g2508 992 Pfam Malectin domain 401 584 IPR021720 -
Sed05g2508 992 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Sed05g2508 992 Gene3D - 398 588 - -
Sed05g2508 992 CDD STKc_IRAK 667 934 - -
Sed05g2508 992 PRINTS Leucine-rich repeat signature 301 314 - -
Sed05g2508 992 PRINTS Leucine-rich repeat signature 113 126 - -
Sed05g2508 992 ProSiteProfiles Protein kinase domain profile. 661 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2508 992 Pfam Leucine Rich Repeat 113 131 IPR001611 GO:0005515(InterPro)
Sed05g2508 992 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Sed05g2508 992 Pfam Leucine Rich Repeat 160 181 IPR001611 GO:0005515(InterPro)
Sed05g2508 992 SUPERFAMILY L domain-like 71 403 - -
Sed05g2508 992 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Sed05g2508 992 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Sed05g2508 992 Pfam Leucine rich repeat 282 338 IPR001611 GO:0005515(InterPro)
Sed05g2508 992 Gene3D Ribonuclease Inhibitor 267 396 IPR032675 -
Sed05g2508 992 Gene3D Ribonuclease Inhibitor 199 266 IPR032675 -
Sed05g2508 992 Gene3D Ribonuclease Inhibitor 45 198 IPR032675 -
Sed05g2508 992 Gene3D Transferase(Phosphotransferase) domain 1 737 952 - -
Sed05g2508 992 SUPERFAMILY Protein kinase-like (PK-like) 646 933 IPR011009 -
Sed05g2508 992 Gene3D Phosphorylase Kinase; domain 1 629 736 - -
Sed05g2508 992 SMART serkin_6 661 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2508 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 589 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2508 Sed-Chr5:37165072 Sed05g2510 Sed-Chr5:37165072 0.00E+00 dispersed
Sed05g2507 Sed-Chr5:37165072 Sed05g2508 Sed-Chr5:37165072 0.00E+00 tandem
Sed05g2508 Sed-Chr5:37165072 Sed05g2509 Sed-Chr5:37165072 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79232 PF07714 PK_Tyr_Ser-Thr 6.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2508 - - - 0.0