Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2509 ATGTTGAAAACAAGAAATATAAACGTTATGGCTTTCTTCGTTGTTTCTTTCGTTACCAGTGTTGCTTTTGGATTTCCTATTTTGCCTCGTGAGGAAGTGGAAGGATTGAAGCATGTGGCAGAGACATTGGGAAAGAGAGATTGGAATTTCAGTGTAAATCCATGCAGTGAACAGTTCGGTTGGATATCTAAAAACGACGACATTGTACGTTTCAAAAATAATGTCACCTGCAATTGCACATTTCTTAATGCTACTCTCTGCCACGTCACCCATATAATTTTGAATGGGCAGAGTTTGGCAGGAACGCTTCCATTGCAGCTCTTTAGACTGCCCTACCTTCAGGAACTTGATCTCTCTCGGAACTATCTCAGCGGCGAAATTCCTCCACAATGGGCCTCCACAAAACTTCTCCGACTTTTATTGCTCGGAAATCGCTTGACTGGTTCCATTCCGCAAGAGATTGGAAACATTACTACTCTTACAAAGTTACATCTTTCCTCGAATAATTTTACTGGAAAACTACCAACTTCTCTGGGAATGCTGATCTCATTGATCTCATTTCGAATCTGTGACAATGACTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGATAAATGTGGAGAGAATAAGGATTCAAGCAAGTGGATTGAGCGGGCCTCTTCCTTCTGAAATCAGACTCCTGACCAAATTAACTGACTTAAGAATCAGTGACTTGAATGGGCCTTCATCACCCTTTCCGCCTCTTAATAATTTGACCAATATTGGAAGATTAATATTAAGAAGTTGCAATATCACTGGATTGCTGCCCGAGTATTTAGATGGGATGAAATCCTTGGAAATCTTAGACCTCAGCTATAACAAATTAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGCGAACACAGTGAACATATTCTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAGTGGATGCTGCTTAGAGGACGTAGCATTGATCTCTCTTACAATAAATTTAAACCACTATCTACGGGCTGTCAATCACGAGATACGAACTTATTTGCGAGCTCTGCATTGGACAATAATTCCAATCTTGTTTCTTGTTTGGGGGACCAAATTTGTCCAGAGAATTTATATCATCTCCATATAAATTGTGGTGGCAAAGAAGAAGTAATTAATGGTACAAAGTTTGAAGGAGATGAAAACACAGGCATGCCATCTGTGTTTGTCTCGAGCAATGCTTATTGGGGCTTCAGCAACACTGGAATATTTTTGGATGATAGTCGTCTTTTAGTTGACTATATTGAACTAAATTCATCAGAACTTCGTATGGTAGATTCTAAACTATATGAGAATGCTCGTATTTCTCCAATGTCTCTTACATATTATGTGTACTGTATGGGGAATGGAAACTACACGTTAAGCCTCCATTTTGCTGAAATTACTTTTACTAATGGTAAAACTTTTAGCAGCCTAGGAAGACGAATTTTTGATGTTTATGTGCAGGGGCGGCTAGTGTTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAATCTGTGACAAAAAAGATTTCCACTGTTGTTACTAGCAATACCATAGAGATTCGTTTTCATTGGGCTGGGAAGGGGACAACGTCTATCCCTTTTGGTGGAGTCTATGGCCCTCTGATATCGGCCATTTCGATAGAGCCTGACTTTGAGCCTCCATCAAAAGGTCGAAGTCCCTTACCAGTTGGTGCAATTCTGGGAATTGTAGCTGCAGTTGTCCTTGTTATCATTTCAATTCTTGGAATTTTATGGTGGAGAGGTTGCCTTGGCCAGAAAAGTACATTTCAAAAAGATCTCAAAAGTCTAGATCTGCAAACGGGCTCATTCACGTTACGTCAAATCAAAGCTGCCACTAATAACTTTGACATCTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGGTTTCTCTTGGATGGTACCATAATTGCAGTGAAGCAACTTTCTTCTAAGTCAAAGCAAGGAATCCACGAATTTGTGAATGAGATAGGCATGATATCTGCTTTGCACCACCCACACCTAGTTAGACTTTATGGATGTTGTACCGAAGAAAATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAGGCTATGTTTGGAAGTCGATTGAAATTAGAATGGCCAACAAGACAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTATCTTCACGAGGAATCAAGAGTGAAGATTGTTCATAGAGATATCAAAGCGACTAATGTATTGTTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCTAAGCTTGAAGAAGAAGGAAATACCCACATCAGTACACGAATTGCTGGAACTTTTGGATATATTGCACCAGAATATGCAATGCGAGGCTACTTAACTGACAAAGCGGATGTTTATAGCTTTGGCATTGTGGCCTTGGAAATAGTTAGCGGAAGGAGCAATACTACATACCGATCAAAGGACGATTGCTTTTATCTGCTGGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTGGTTGATCCAAGGTTAGGGTCCAACTTCAACCAAGGGGAGGCAATGACTATGATCAATGTTGCTCTTCATTGCACCAATGTTTCTTCTACAGAAAGACCTTCCATGTCTTTAGTGGTGGCCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGTTGGTTTCTGCTCCAAATGAGACAAGAGCAAAGATGGGTGCTATGTGGACCATTTTGGAGAAGAGCTTGAAACAAACTGACAATGAGAACCAGGCAGGGGTTATCTCTATGGACATGTCATGTACCAATACTTCTTCAACATCAATGAGTAGAAACTAG 2898 40.06 MLKTRNINVMAFFVVSFVTSVAFGFPILPREEVEGLKHVAETLGKRDWNFSVNPCSEQFGWISKNDDIVRFKNNVTCNCTFLNATLCHVTHIILNGQSLAGTLPLQLFRLPYLQELDLSRNYLSGEIPPQWASTKLLRLLLLGNRLTGSIPQEIGNITTLTKLHLSSNNFTGKLPTSLGMLISLISFRICDNDFEGQIPSFIQNWINVERIRIQASGLSGPLPSEIRLLTKLTDLRISDLNGPSSPFPPLNNLTNIGRLILRSCNITGLLPEYLDGMKSLEILDLSYNKLSGQIPTSFHSLANTVNIFLTGNLLNGSVPEWMLLRGRSIDLSYNKFKPLSTGCQSRDTNLFASSALDNNSNLVSCLGDQICPENLYHLHINCGGKEEVINGTKFEGDENTGMPSVFVSSNAYWGFSNTGIFLDDSRLLVDYIELNSSELRMVDSKLYENARISPMSLTYYVYCMGNGNYTLSLHFAEITFTNGKTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKSVTKKISTVVTSNTIEIRFHWAGKGTTSIPFGGVYGPLISAISIEPDFEPPSKGRSPLPVGAILGIVAAVVLVIISILGILWWRGCLGQKSTFQKDLKSLDLQTGSFTLRQIKAATNNFDISNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGIHEFVNEIGMISALHHPHLVRLYGCCTEENQLLLVYEYMENNSLAQAMFGSRLKLEWPTRQKICIGIAKGLAYLHEESRVKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLGSNFNQGEAMTMINVALHCTNVSSTERPSMSLVVAMLEGKVAVKELVSAPNETRAKMGAMWTILEKSLKQTDNENQAGVISMDMSCTNTSSTSMSRN 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37165072 37176631 + Sed0010437.3 Sed05g2509 715135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2509 965 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 606 712 - -
Sed05g2509 965 ProSiteProfiles Protein kinase domain profile. 637 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2509 965 SMART serkin_6 637 905 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2509 965 FunFam Inactive leucine-rich repeat receptor-like protein kinase 103 200 - -
Sed05g2509 965 Gene3D Ribonuclease Inhibitor 241 353 IPR032675 -
Sed05g2509 965 SUPERFAMILY Protein kinase-like (PK-like) 622 906 IPR011009 -
Sed05g2509 965 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 919 IPR051824 -
Sed05g2509 965 Gene3D - 374 564 - -
Sed05g2509 965 Gene3D Phosphorylase Kinase; domain 1 605 712 - -
Sed05g2509 965 Gene3D Ribonuclease Inhibitor 30 240 IPR032675 -
Sed05g2509 965 CDD STKc_IRAK 643 907 - -
Sed05g2509 965 Gene3D Transferase(Phosphotransferase) domain 1 713 925 - -
Sed05g2509 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2509 965 Pfam Leucine Rich Repeat 160 180 IPR001611 GO:0005515(InterPro)
Sed05g2509 965 Pfam Leucine Rich Repeat 113 131 IPR001611 GO:0005515(InterPro)
Sed05g2509 965 PRINTS Leucine-rich repeat signature 277 290 - -
Sed05g2509 965 PRINTS Leucine-rich repeat signature 113 126 - -
Sed05g2509 965 Pfam Malectin domain 377 560 IPR021720 -
Sed05g2509 965 Pfam Protein tyrosine and serine/threonine kinase 639 903 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2509 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase 713 917 - -
Sed05g2509 965 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 375 565 - -
Sed05g2509 965 SUPERFAMILY L domain-like 70 382 - -
Sed05g2509 965 Pfam Leucine rich repeat 258 314 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2507 Sed-Chr5:37165072 Sed05g2509 Sed-Chr5:37165072 0.00E+00 dispersed
Sed05g2509 Sed-Chr5:37165072 Sed05g2511 Sed-Chr5:37189040 0.00E+00 dispersed
Sed05g2508 Sed-Chr5:37165072 Sed05g2509 Sed-Chr5:37165072 0.00E+00 tandem
Sed05g2509 Sed-Chr5:37165072 Sed05g2510 Sed-Chr5:37165072 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79233 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2509 - - - 0.0