Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2510 ATGTTGAAAACAAGAAATATAAACGTTATGGCTTTCTTCGTTGTTTCTTTCGTTACCAGTGTTGCTTTTGGATTTCCTATTTTGCCTCGTGAGGAAGTGGAAGGATTGAAGCATGTGGCAGAGACATTGGGAAAGAGAGATTGGAATTTCAGTGTAAATCCATGCAGTGAACAGTTCGGTTGGATATCTAAAAACGACGACATTGTACGTTTCAAAAATAATGTCACCTGCAATTGCACATTTCTTAATGCTACTCTCTGCCACGTCACCCATATAATTTTGAATGGGCAGAGTTTGGCAGGAACGCTTCCATTGCAGCTCTTTAGACTGCCCTACCTTCAGGAACTTGATCTCTCTCGGAACTATCTCAGCGGCGAAATTCCTCCACAATGGGCCTCCACAAAACTTCTCCGACTTTTATTGCTCGGAAATCGCTTGACTGGTTCCATTCCGCAAGAGATTGGAAACATTACTACTCTTACAAAGTTACATCTTTCCTCGAATAATTTTACTGGAAAACTACCAACTTCTCTGGGAATGCTGATCTCATTGATCTCATTTCGAATCTGTGACAATGACTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGATAAATGTGGAGAGAATAAGGATTCAAGCAAGTGGATTGAGCGGGCCTCTTCCTTCTGAAATCAGACTCCTGACCAAATTAACTGACTTAAGAATCAGTGACTTGAATGGGCCTTCATCACCCTTTCCGCCTCTTAATAATTTGACCAATATTGGAAGATTAATATTAAGAAGTTGCAATATCACTGGATTGCTGCCCGAGTATTTAGATGGGATGAAATCCTTGGAAATCTTAGACCTCAGCTATAACAAATTAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGCGAACACAGTGAACATATTCTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAGTGGATGCTGCTTAGAGGACGTAGCATTGATCTCTCTTACAATAAATTTAAACCACTATCTACGGGCTGTCAATCACGAGATACGAACTTATTTGCGAGCTCTGCATTGGACAATAATTCCAATCTTGTTTCTTGTTTGGGGGACCAAATTTGTCCAGAGAATTTATATCATCTCCATATAAATTGTGGTGGCAAAGAAGAAGTAATTAATGGTACAAAGTTTGAAGGAGATGAAAACACAGGCATGCCATCTGTGTTTGTCTCGAGCAATGCTTATTGGGGCTTCAGCAACACTGGAATATTTTTGGATGATAGTCGTCTTTTAGTTGACTATATTGAACTAAATTCATCAGAACTTCGTATGGTAGATTCTAAACTATATGAGAATGCTCGTATTTCTCCAATGTCTCTTACATATTATGTGTACTGTATGGGGAATGGAAACTACACGTTAAGCCTCCATTTTGCTGAAATTACTTTTACTAATGGTAAAACTTTTAGCAGCCTAGGAAGACGAATTTTTGATGTTTATGTGCAGGGGCGGCTAGTGTTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAATCTGTGACAAAAAAGATTTCCACTGTTGTTACTAGCAATACCATAGAGATTCGTTTTCATTGGGCTGGGAAGGGGACAACGTCTATCCCTTTTGGTGGAGTCTATGGCCCTCTGATATCGGCCATTTCGATAGAGCCTGACTTTGAGCCTCCATCAAAAGGTCGAAGTCCCTTACCAGTTGGTGCAATTCTGGGAATTGTAGCTGCAGTTGTCCTTGTTATCATTTCAATTCTTGGAATTTTATGGTGGAGAGGTTGCCTTGGCCAGAAAAGTACATTTCAAAAAGATCTCAAAAGTCTAGATCTGCAAACGGGCTCATTCACGTTACGTCAAATCAAAGCTGCCACTAATAACTTTGACATCTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGGTTTCTCTTGGATGGTACCATAATTGCAGTGAAGCAACTTTCTTCTAAGTCAAAGCAAGGAATCCACGAATTTGTGAATGAGATAGGCATGATATCTGCTTTGCACCACCCACACCTAGTTAGACTTTATGGATGTTGTACCGAAGAAAATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAGGCTATGTTTGGACCTGAAGGAAGTCGATTGAAATTAGAATGGCCAACAAGACAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTATCTTCACGAGGAATCAAGAGTGAAGATTGTTCATAGAGATATCAAAGCGACTAATGTATTGTTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCTAAGCTTGAAGAAGAAGGAAATACCCACATCAGTACACGAATTGCTGGAACTTTTGGATATATTGCACCAGAATATGCAATGCGAGGCTACTTAACTGACAAAGCGGATGTTTATAGCTTTGGCATTGTGGCCTTGGAAATAGTTAGCGGAAGGAGCAATACTACATACCGATCAAAGGACGATTGCTTTTATCTGCTGGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTGGTTGATCCAAGGTTAGGGTCCAACTTCAACCAAGGGGAGGCAATGACTATGATCAATGTTGCTCTTCATTGCACCAATGTTTCTTCTACAGAAAGACCTTCCATGTCTTTAGTGGTGGCCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGTTGGTTTCTGCTCCAAATGAGACAAGAGCAAAGATGGGTGCTATGTGGACCATTTTGGAGAAGAGCTTGAAACAAACTGACAATGAGAACCAGGCAGGGGTTATCTCTATGGACATGTCATGTACCAATACTTCTTCAACATCAATGAGTAGAAACTAG 2907 40.11 MLKTRNINVMAFFVVSFVTSVAFGFPILPREEVEGLKHVAETLGKRDWNFSVNPCSEQFGWISKNDDIVRFKNNVTCNCTFLNATLCHVTHIILNGQSLAGTLPLQLFRLPYLQELDLSRNYLSGEIPPQWASTKLLRLLLLGNRLTGSIPQEIGNITTLTKLHLSSNNFTGKLPTSLGMLISLISFRICDNDFEGQIPSFIQNWINVERIRIQASGLSGPLPSEIRLLTKLTDLRISDLNGPSSPFPPLNNLTNIGRLILRSCNITGLLPEYLDGMKSLEILDLSYNKLSGQIPTSFHSLANTVNIFLTGNLLNGSVPEWMLLRGRSIDLSYNKFKPLSTGCQSRDTNLFASSALDNNSNLVSCLGDQICPENLYHLHINCGGKEEVINGTKFEGDENTGMPSVFVSSNAYWGFSNTGIFLDDSRLLVDYIELNSSELRMVDSKLYENARISPMSLTYYVYCMGNGNYTLSLHFAEITFTNGKTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKSVTKKISTVVTSNTIEIRFHWAGKGTTSIPFGGVYGPLISAISIEPDFEPPSKGRSPLPVGAILGIVAAVVLVIISILGILWWRGCLGQKSTFQKDLKSLDLQTGSFTLRQIKAATNNFDISNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGIHEFVNEIGMISALHHPHLVRLYGCCTEENQLLLVYEYMENNSLAQAMFGPEGSRLKLEWPTRQKICIGIAKGLAYLHEESRVKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLGSNFNQGEAMTMINVALHCTNVSSTERPSMSLVVAMLEGKVAVKELVSAPNETRAKMGAMWTILEKSLKQTDNENQAGVISMDMSCTNTSSTSMSRN 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37165072 37176631 + Sed0010437.4 Sed05g2510 715136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2510 968 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 606 712 - -
Sed05g2510 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase 713 920 - -
Sed05g2510 968 FunFam Inactive leucine-rich repeat receptor-like protein kinase 103 200 - -
Sed05g2510 968 Gene3D Transferase(Phosphotransferase) domain 1 713 928 - -
Sed05g2510 968 Pfam Malectin domain 377 560 IPR021720 -
Sed05g2510 968 PRINTS Leucine-rich repeat signature 113 126 - -
Sed05g2510 968 PRINTS Leucine-rich repeat signature 277 290 - -
Sed05g2510 968 SMART serkin_6 637 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2510 968 Gene3D - 374 564 - -
Sed05g2510 968 ProSiteProfiles Protein kinase domain profile. 637 918 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2510 968 Pfam Leucine rich repeat 258 314 IPR001611 GO:0005515(InterPro)
Sed05g2510 968 Gene3D Ribonuclease Inhibitor 241 353 IPR032675 -
Sed05g2510 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2510 968 Gene3D Phosphorylase Kinase; domain 1 605 712 - -
Sed05g2510 968 Pfam Protein tyrosine and serine/threonine kinase 639 906 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2510 968 Pfam Leucine Rich Repeat 160 180 IPR001611 GO:0005515(InterPro)
Sed05g2510 968 Pfam Leucine Rich Repeat 113 131 IPR001611 GO:0005515(InterPro)
Sed05g2510 968 CDD STKc_IRAK 643 910 - -
Sed05g2510 968 Gene3D Ribonuclease Inhibitor 30 240 IPR032675 -
Sed05g2510 968 SUPERFAMILY L domain-like 73 321 - -
Sed05g2510 968 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 375 565 - -
Sed05g2510 968 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 922 IPR051824 -
Sed05g2510 968 SUPERFAMILY Protein kinase-like (PK-like) 622 909 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2495 Sed-Chr5:36984638 Sed05g2510 Sed-Chr5:37165072 8.1e-314 dispersed
Sed05g2496 Sed-Chr5:36984638 Sed05g2510 Sed-Chr5:37165072 3.90E-303 dispersed
Sed05g2506 Sed-Chr5:37142821 Sed05g2510 Sed-Chr5:37165072 2.20E-277 dispersed
Sed05g2508 Sed-Chr5:37165072 Sed05g2510 Sed-Chr5:37165072 0.00E+00 dispersed
Sed05g2510 Sed-Chr5:37165072 Sed08g2716 Sed-Chr8:39075901 2.00E-211 dispersed
Sed05g2509 Sed-Chr5:37165072 Sed05g2510 Sed-Chr5:37165072 0.00E+00 tandem
Sed05g2510 Sed-Chr5:37165072 Sed05g2511 Sed-Chr5:37189040 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79234 PF07714 PK_Tyr_Ser-Thr 5.80E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2510 - - - 0.0