Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2511 ATGAAGGTTGGAGGATGTAGTGAAGAAATAATCATTTCAATTTTTCTATCTTCAGAAGCTCTACCCAAACCAGAAAACTTTTGGAAGAAACTCAAAGCCTACACAAGTACCATGTTGAAAATAAGAAATACAATCGTTATTCATTTGCTTGTTGTTTCTTTGGTTACCGGCGTTAGTTTTGGATTTCCTATTTTGCCTCGTGAAGAAGTGGAAGGATTGAAGCATGTGGCAGAGACATTGGGAAAGAGAGATTGGAATTTCAGTGTAAATCCATGCAGTGGACAGTTCGGTTGGTTATCTAAAAACGACGATATTCTTCGTTTCAAAAATAACGTCACCTGCAATTGCACATTTCTTAATGCTACTCTCTGCCACGTCACCCATATAATTTTGAATGGGCAGAGTTTGGCAGGAACGCTTCCATTGCAGCTCTTTAGACTGCCCTACCTTCAGGAACTTGATCTCTCTCGGAACTATCTCAGCGGCGAAATTCCTCCACAATGGGCCTCCACAAAACTTCTCCGACTTCGAATCTGTGACAATGACTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGATAAATGTGGAGAGAATAAGGATTCAAGCAAGTGGATTGAGCGGGCCTCTTCCTTCTGAAATCAGACTCCTGACCAAATTAACTGACTTAAGAATCAGTGACTTGAATGGGCCTTCATCACCCTTTCCGCCTCTTAATAATTTGACCAATATTGGAAGATTAATATTAAGAAGTTGCAATATCACTGGATTGCTGCCCGAGTATTTAGATGGGATGAAATCCTTGGAAATCTTAGACCTCAGCTATAACAAATTAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGCGAACACAGTGAACATATTCTTAACTGGAAACTTGCTCAATGGTTTGGTGCCTGAGTGGATGCTTCTTAAAGGACGTAGCATTGACCTCTCATACAATAAATTTAAACCTCTATCTACGGACTGTCAATCACGAGATACGAACCTATTTGCAAGCTCTGCATTAGACAATAATTCTAATCTTGTTTCTTGTTTGGGGGACCAAATTTGTCGAAAGAATTTATATCATCTTCATATAAATTGTGGTGGCAAAGAAACAGTTATTAATGATACGAAGTTTGAAGGAGATGAAAACACAGGCAAGTCGTCTGTGTTCGTCTCGAGCAGTGCAAATTGGGGCTTCAGCAACACTGGGATATTTTTGGATGATGATCGTCTTTTAGTTAATTATATTGAACTAAGTTCATCAGAACTTCGTATGGTAGATTCTAAACTATATGAGAATGCCCGCATTTCTCCAATGTCTCTTACATATTATGTGTACTGTATGGGGAATGGAAACTACACGTTAAGCCTCCATTTTGCTGAAATTAGTTTTACAAATGGTAAAACTTTTAGCAGTCTTGGAAGACGATTTTTTGATGTTTATGTGCAGGGGCGGCTAGTGTTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTAGTAAACCTGTGACAAAAAAGATTTCCACTGTTGTTACTAGCAATACCATAGAGATTCGTTTTTATTGGGCTGGGAAGGGGACAACTTCTATCCCTGTTGGTGGAGTCTATGGCCCTCTGATATCGGCCATTTCGATAGAGCCTGACTTTGAGCCTCCATCAGAAGGTCGAAGTCCCTTACCAGTTGGTACAATACTTGGAATTGTACCTGCAGTGGTCCTTGTTATAATTTCAATTCTTGGAACTCTATGGTGGAGAGGTTGTCTGGGCCAGAAAAATACATTTCAGAAAGATCTCAAAGGTCTAGATCTGCAAACGGGCTCATTCACGTTACGTCAAATCAAAGCTGCCACTAATAACTTTGACATCTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGGTTTCTCTTGGATGGTACCATAATTGCAGTGAAGCAACTTTCTTCTAAGTCAAAGCAAGGAATCCACGAATTTGTGAATGAGATAGGCATGATATCTGCTTTGCACCACCCACACCTAGTTAGACTTTATGGATGTTGTACCGAAGAAAATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAGGCTATGTTTGGACCTGAAGGAAGTCGATTGAAATTAGAATGGCCAACAAGACAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTATCTTCACGAGGAATCAAGAGTGAAGATTGTTCATAGAGATATCAAAGCGACTAATGTATTGTTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCTAAGCTTGAAGAAGAAGGAAATACCCACATCAGTACACGAATTGCTGGAACTTTTGGATATATTGCACCAGAATATGCAATGCGAGGCTACTTAACTGACAAAGCGGATGTTTATAGCTTTGGCATTGTGGCCTTGGAAATAGTTAGCGGAAGGAGCAATACTACATACCGATCAAAGGACGATTGCTTTTATCTGCTGGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTGGTTGATCCAAGGTTAGGGTCCAACTTCAACCTAGGGGAGGCAATGACTATGATCAATATTGCTCTTCATTGCACCAATGTTTCTTCTACGGAAAGACCTTCCATGTCTTTAGTGGTGGCCATGTTGGAAGGGAAGGTTGCTGTGAAGGAATTGGTTTCTGCTCCAAATGAGACAAGAGCAAAGATGGGTGCTATGTGGACCATTTTGGAGCAGAGCTTGAAACGAACTGACAATGAGAACCAGGCAGAGGTTATCTCTATGGAGATGCCATGTACCAGTTACTCTTCAACATCAATGAGTAGAAACTAG 2874 40.01 MKVGGCSEEIIISIFLSSEALPKPENFWKKLKAYTSTMLKIRNTIVIHLLVVSLVTGVSFGFPILPREEVEGLKHVAETLGKRDWNFSVNPCSGQFGWLSKNDDILRFKNNVTCNCTFLNATLCHVTHIILNGQSLAGTLPLQLFRLPYLQELDLSRNYLSGEIPPQWASTKLLRLRICDNDFEGQIPSFIQNWINVERIRIQASGLSGPLPSEIRLLTKLTDLRISDLNGPSSPFPPLNNLTNIGRLILRSCNITGLLPEYLDGMKSLEILDLSYNKLSGQIPTSFHSLANTVNIFLTGNLLNGLVPEWMLLKGRSIDLSYNKFKPLSTDCQSRDTNLFASSALDNNSNLVSCLGDQICRKNLYHLHINCGGKETVINDTKFEGDENTGKSSVFVSSSANWGFSNTGIFLDDDRLLVNYIELSSSELRMVDSKLYENARISPMSLTYYVYCMGNGNYTLSLHFAEISFTNGKTFSSLGRRFFDVYVQGRLVLKDFNIVDAAGGASKPVTKKISTVVTSNTIEIRFYWAGKGTTSIPVGGVYGPLISAISIEPDFEPPSEGRSPLPVGTILGIVPAVVLVIISILGTLWWRGCLGQKNTFQKDLKGLDLQTGSFTLRQIKAATNNFDISNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGIHEFVNEIGMISALHHPHLVRLYGCCTEENQLLLVYEYMENNSLAQAMFGPEGSRLKLEWPTRQKICIGIAKGLAYLHEESRVKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLGSNFNLGEAMTMINIALHCTNVSSTERPSMSLVVAMLEGKVAVKELVSAPNETRAKMGAMWTILEQSLKRTDNENQAEVISMEMPCTSYSSTSMSRN 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37189040 37199793 + Sed0026424.1 Sed05g2511 715137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2511 957 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 170 907 IPR051824 -
Sed05g2511 957 Gene3D Transferase(Phosphotransferase) domain 1 702 917 - -
Sed05g2511 957 Gene3D Phosphorylase Kinase; domain 1 594 701 - -
Sed05g2511 957 Gene3D Ribonuclease Inhibitor 232 361 IPR032675 -
Sed05g2511 957 Gene3D - 363 553 - -
Sed05g2511 957 CDD STKc_IRAK 632 899 - -
Sed05g2511 957 PRINTS Leucine-rich repeat signature 150 163 - -
Sed05g2511 957 PRINTS Leucine-rich repeat signature 266 279 - -
Sed05g2511 957 Gene3D Ribonuclease Inhibitor 83 231 IPR032675 -
Sed05g2511 957 SUPERFAMILY Protein kinase-like (PK-like) 612 898 IPR011009 -
Sed05g2511 957 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 595 701 - -
Sed05g2511 957 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 364 554 - -
Sed05g2511 957 Pfam Leucine rich repeat 247 303 IPR001611 GO:0005515(InterPro)
Sed05g2511 957 Pfam Malectin domain 366 549 IPR021720 -
Sed05g2511 957 ProSiteProfiles Protein kinase domain profile. 626 907 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2511 957 Pfam Leucine Rich Repeat 150 168 IPR001611 GO:0005515(InterPro)
Sed05g2511 957 SMART serkin_6 626 897 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2511 957 FunFam Putative LRR receptor-like serine/threonine-protein kinase 702 909 - -
Sed05g2511 957 SUPERFAMILY L domain-like 109 335 - -
Sed05g2511 957 Pfam Protein tyrosine and serine/threonine kinase 628 895 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2511 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2509 Sed-Chr5:37165072 Sed05g2511 Sed-Chr5:37189040 0.00E+00 dispersed
Sed05g2511 Sed-Chr5:37189040 Sed13g0631 Sed-Chr13:4306822 2.20E-202 dispersed
Sed05g2511 Sed-Chr5:37189040 Sed05g2513 Sed-Chr5:37215751 4.90E-141 proximal
Sed05g2510 Sed-Chr5:37165072 Sed05g2511 Sed-Chr5:37189040 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79235 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2511 - - - 0.0