Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2513 ATGGAAGAAGCTGGTGGAGTTGGTAAGAACTTTGTATGGGCAGAGCGTAATGTTGAAGTCGATGGAAACACTCTTGAGATCCACTTATATTGGGCCGGTAAGGGAACAAATGGCATTCCAGAAAGAGGGGTGTACGGACCTCTAATATCTGCGATTTCAGTGACACCCAACTTTAATGTGGGAGGTCTATCACCCGGAGCTATTGCTGGCATTGTTGTTGGTAGTGCTGTGTTCATTTGTATGTTAGTATTGGTTGTTCTTCGAAGGATGGGTTACTTAGGCCGCAAGGAAATTGAAGACGAAGAACTTCGGGATCTAAAATTACAAACGGGATGTTTTAGTTTAAGACAAATCAAAGCAGCCACCAACAACTTTGACTCTGCATATAAGATCGGCGAGGGAGGTTTTGGTCCTGTGTACAAGGGAGTACTATCCGATGGCGCTTCAATTGCCGTAAAGCAACTATCCTCCAAATCAAGGCAAGGAAACCGAGAATTTATCACTGAAATCGGCATGATATCTGCATTACAACATCCGAATCTTGTTAAGCTTTATGGTTGCTGTATTGAAGGAAAGCAGTTGATGCTTATTTACGAGTATTTAGAGAACAATAATCTTGCCCGTGCACTTTTTAGCCCTGAGGAGCATTCACTACATTTGGATTGGCCTGTAAGAATGAAGATATGCTTGGGAATTGCAAGAGGGTTGGCTTACCTTCATGAAGAATCTTTATTCAAAGTTGTTCACAGAGATATAAAAGCTACTAACATTCTACTCGATGGAAGCTTGAATGCCAAGATTTCAGACTTTGGTTTGGCTAAGCTCGATGAAGAGGAGAACACTCATATTAGCACAAGAATTGCAGGCACCATCGGTTACATGGCTCCTGAATATGCGATGAGGGGATATTTGACTGATAAAGCTGATGTTTATAGCTTTGGAGTTGTAGCCTTAGAGATTGTTAGCGGAAAAAGTAATACGAGTTACCGGCCTAAAGAGGAGTTTGTTTATCTTCTTGACTGGGCTTTTGTTCTACAAGAGAAAGGGAGCCTGCTAGAACTTGTTGATCCGAGACTTGGCCCACATTACTCTGAAGAGGAGGTAATGAGGATGCTTCATATAGCTCTCCTGTGCACAAACCTATCTCCAAGTCTCAGACCATCTATGTCTTCCGTGGTTAGCATGCTTGAAGGTAAAGCTATAGTCGAAGTATCGAACATCAAGCGCAACACGGCTGAGCGAGATGCAAGGTTCAAAGCCTTTGAGAAGCTGTCACAAGACAGCTTAACAAGCATTTCAATCTCGTCGCAAGCCATTCACGGGCCATGGGACTCATCTACTTCTACCCAAAACAGAGACGACACTAAAGAGTATTCTTCAACCAGAAGTCTCCTTGGAGATTGA 1404 42.95 MEEAGGVGKNFVWAERNVEVDGNTLEIHLYWAGKGTNGIPERGVYGPLISAISVTPNFNVGGLSPGAIAGIVVGSAVFICMLVLVVLRRMGYLGRKEIEDEELRDLKLQTGCFSLRQIKAATNNFDSAYKIGEGGFGPVYKGVLSDGASIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGKQLMLIYEYLENNNLARALFSPEEHSLHLDWPVRMKICLGIARGLAYLHEESLFKVVHRDIKATNILLDGSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTSYRPKEEFVYLLDWAFVLQEKGSLLELVDPRLGPHYSEEEVMRMLHIALLCTNLSPSLRPSMSSVVSMLEGKAIVEVSNIKRNTAERDARFKAFEKLSQDSLTSISISSQAIHGPWDSSTSTQNRDDTKEYSSTRSLLGD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37215751 37218981 + Sed0015874.1 Sed05g2513 715139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2513 467 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 94 200 - -
Sed05g2513 467 Gene3D Transferase(Phosphotransferase) domain 1 201 421 - -
Sed05g2513 467 SUPERFAMILY Protein kinase-like (PK-like) 110 399 IPR011009 -
Sed05g2513 467 CDD STKc_IRAK 131 398 - -
Sed05g2513 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2513 467 MobiDBLite consensus disorder prediction 439 454 - -
Sed05g2513 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 422 IPR051824 -
Sed05g2513 467 Gene3D Phosphorylase Kinase; domain 1 93 200 - -
Sed05g2513 467 Pfam Protein tyrosine and serine/threonine kinase 129 395 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2513 467 SMART serkin_6 125 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2513 467 ProSiteProfiles Protein kinase domain profile. 125 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2513 467 MobiDBLite consensus disorder prediction 439 467 - -
Sed05g2513 467 FunFam Putative LRR receptor-like serine/threonine-protein kinase 201 408 - -
Sed05g2513 467 Pfam Malectin domain 2 52 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2513 Sed-Chr5:37215751 Sed13g0631 Sed-Chr13:4306822 9.00E-181 dispersed
Sed05g2511 Sed-Chr5:37189040 Sed05g2513 Sed-Chr5:37215751 4.90E-141 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79236 PF07714 PK_Tyr_Ser-Thr 2.20E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2513 - - - 0.0