Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2521 ATGGCGAATCGGAAACTGGAGAAGATGGCATCGATTGATGCGCAGCTTCGGCTTTTGGCACCGGCCCGAGTGAGTGATGATGATAAATTGGTGGAGTATGATGCATTGTTACTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGAGAAGACATGAAGGAAACTGTGCAAGAATGTTATGAACTTTCTGCTGAATACGAAGGGAAGAGGGATCCAAAGAAACTTGAGGAACTTGGAAATGTGCTGACTAGTTTAGATCCTGGGGACTCTATTGTCATTGCGAAGTCTTTCTCCCATATGCTTAACTTGGCCAACTTGGCCGAGGAGGTTCAGATAGCTTATCGTCGAAGGATCAAATTGAAGAAGGGTGATTTGTCTGATGAGAGCTCTGCAACCACTGAATCTGACATTGAGGAAACTTTGAAGAAGCTTGTGGGCAAAATGAAGAAGTCCCCTCAAGAAGTTTTTGATGCTTTGAAGAACCAGACTGTTGATTTGGTCTTAACTGCTCATCCTACTCAATCAGTTCGTAGATCTTTGCTTCAAAAGCATGCGAGAATAAGGGATTGTTTGGTTCAGTTGTACGCCAAAAATATTACTCCTGATGACAAGCAAGAGCTTGATGAGGCACTTCAGAGAGAGATTCAAGCTGCGTTTCGTACTGACGAAATCCGTAGAGCTCCTCCTGCCCCACAAGATGAAATGAGAGCCGGAATGAGCTACTTCCACGAGACAATTTGGAAGGGCGTCCCTAAATTTCTACGTCGTGTTGATACTGCATTGAAAAACATTGGAATTAATGAGCGTGTTCCTTATAATGCACCCCTAATTCAGTTTTCATCCTGGATGGGCGGTGACCGTGATGGTAATCCTAGGGTGACACCTGAGGTTACTAGGGATGTCTGTCTTCTTGCTAGAATGATGGCTGCTAATCTTTACTACTCACAGATTGAGGATCTCATGTTTGCGTTGTCTATGTGGCGTTGCAATAGTGAGCTTCGTGAGCGTGCAGACACACTTCATAATTCATCAAGGAGAGATGCAAAACACTATATAGAATTTTGGAAGCAAATTCCAGCAAGTGAACCATACCGGGTGATTCTTGGTGATGTAAGAGACAAACTTTATCAAACCCGTGAACGTTCTCGCCATTTGTTAGCTAATGAGCATTCTGACATCCCAGAGGATGCCACTTTTACAAACGTTGAGCAGTTCTTGGAACCTCTTGAACTATGTTACAGGTCCCTCTGTGCTTGTGGTGATCGTGCAATTGCCGATGGCATTCTTCTTGATTTTTTGAGGCAAGTGTCCACTTTTGGTCTGTCATTTGTAAAACTTGACATCAGACAAGAGTCTGATCGCCACACCGATGTCTTGGATGCCATTACTCAGCATTTGAATCTTGGTTCCTACAAAGAATGGTCCGAAGAGAAGCGACAAGAATGGCTTTTATCTGAACTCAGTGGCAAACGTCCTCTTTTTGGCCGCGACCTTCCAACAACTGAAGAAATATCTGATGTCTTGAACACATTCCGTGTCATAGCTGAACTTCCTTCGGATAACTTTGGTGCATATATCATTTCCATGGCTACGGCTCCATCTGATGTTTTGGCTGTCGAGCTCTTACAACGTGAGTGCCATGTTATGAAACCACTGAGAGTTGTTCCCTTGTTCGAGAAGCTTGCAGATTTAGAGGCTGCACCAGCCGCCCTTACTCGCCTCTTCTCGATAGATTGGTACAGAAATCGGATTAATGGAAAGCAAGAAGTCATGATTGGCTACTCTGATTCTGGCAAAGATGCTGGACGTTTCTCTGCAGCCTGGCAGTTGTACAAGGCTCAAGAGGCGCTTATAAAGGTGGCAAAGCAATATGGTGTGAAGCTTACTATGTTTCATGGTCGTGGTGGTACTGTTGGAAGGGGAGGTGGACCCACTCATCTTGCTATTTTGTCCCAACCACCCGAGACGATTCACGGTTCACTTCGTATAACCGTACAGGGTGAAGTTATTGAGCAGTCTTTTGGAGAGGAACACTTGTGTTTTAGAACACTCCAACGTTTCACTGCTGCAACACTCGAGCATGGAATGCACCCTCCAGTTTCACCGAAACCTGAATGGCGTGCACTGATGGATGAAATGGCTGTCATTGCTACAGAAGAATATCGTTCTATTGTCTTCAAGGAACCACGATTTGTCGAGTATTTCCGCCTGGCAACACCGGAGCTGGAGTATGGTAGGATGAATATTGGTAGCCGTCCATCAAAGCGAAAGCCAAGTGGTGGTATCGAGTCACTTCGTGCCATACCATGGATTTTTGCATGGACACAAACAAGGTTCCATCTACCGGTTTGGTTAGGCTTTGGAGCAGCATTCAAGAATATAATTAAGAAAGATGTTAAGAACCTTAACATGTTGCAGGAGATGTACAAGCAATGGCCTTTCTTTAGGGTCACCATTGATTTGGTTGAAATGGTGTTCGCCAAAGGAGACCCTGGAATAGCAGCTTTGCATGACAAGCTCCTAGTTTCGGAGGACCTCTGGTCCTTCGGAGAGCGCTTGAGAGCCAACTATGAAGAGACAAAGAGCCTTCTTCTGCAGATTGCTGGACACAAAGATCTTCTTGAAGGGGATCCTTACTTGAAGCAAATACTTCGTCTCCGCGACTCATACATCACAACTCTGAACGCGTGCCAAGCATACACACTAAAACGAATCCGTGACCCAAGCTACAACGTGAAAGTGCGCCCACACATTTCAAGAGATATAATGGAATCAAGCAAACCAGCAGACGAACTCGTTAAGCTAAACCCGAGAAGCGATTATGCTCCTGGGCTAGAGGACACCCTGATCTTGACCATGAAGGGTATTGCTGCTGGAATGCAGAACACTGGTTAA 2898 45.07 MANRKLEKMASIDAQLRLLAPARVSDDDKLVEYDALLLDRFLDILQDLHGEDMKETVQECYELSAEYEGKRDPKKLEELGNVLTSLDPGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLKKGDLSDESSATTESDIEETLKKLVGKMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRDCLVQLYAKNITPDDKQELDEALQREIQAAFRTDEIRRAPPAPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFALSMWRCNSELRERADTLHNSSRRDAKHYIEFWKQIPASEPYRVILGDVRDKLYQTRERSRHLLANEHSDIPEDATFTNVEQFLEPLELCYRSLCACGDRAIADGILLDFLRQVSTFGLSFVKLDIRQESDRHTDVLDAITQHLNLGSYKEWSEEKRQEWLLSELSGKRPLFGRDLPTTEEISDVLNTFRVIAELPSDNFGAYIISMATAPSDVLAVELLQRECHVMKPLRVVPLFEKLADLEAAPAALTRLFSIDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEALIKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRITVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKNIIKKDVKNLNMLQEMYKQWPFFRVTIDLVEMVFAKGDPGIAALHDKLLVSEDLWSFGERLRANYEETKSLLLQIAGHKDLLEGDPYLKQILRLRDSYITTLNACQAYTLKRIRDPSYNVKVRPHISRDIMESSKPADELVKLNPRSDYAPGLEDTLILTMKGIAAGMQNTG 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37254259 37260506 - Sed0024627.1 Sed05g2521 715147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2521 965 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
Sed05g2521 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 965 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Sed05g2521 965 Pfam Phosphoenolpyruvate carboxylase 35 965 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 965 IPR015813 GO:0003824(InterPro)
Sed05g2521 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Sed05g2521 965 Gene3D Phosphoenolpyruvate/pyruvate domain 308 443 - -
Sed05g2521 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Sed05g2521 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Sed05g2521 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2521 K01595 - - csv:101208329 1823.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2439 Sed-Chr4:37605800 Sed05g2521 Sed-Chr5:37254259 0.00E+00 dispersed
Sed04g3407 Sed-Chr4:43940941 Sed05g2521 Sed-Chr5:37254259 0.00E+00 dispersed
Sed05g2521 Sed-Chr5:37254259 Sed05g1918 Sed-Chr5:32558279 0.00E+00 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g116 Blo03g00699 . . . Bpe09g00257 Bpe08g00996 . Bma13g00930 . . Cma01g01246 Cma09g00817 Car01g01067 Car09g00734 Sed05g2521 Cpe06g00652 . Bhi09g03506 Tan01g4327 Cmetu07g1552 . . Mch11g1013 . Cla11g01713 Cam11g1782 Cec11g1803 Cco11g1808 Clacu11g1941 Cmu11g1752 Cre11g2160 . . . . Lsi04g02015 . . . . . . . Bpe11g00450 . . Bma14g00266 . Cmo01g01301 Cmo09g00812 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000971 4 3 4 5 4 1 3 2 1 2 2 2 4 2 1 4 2 4 4 2 2 2 2 2 2 2 2 5 3 2 80