Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2536 ATGGCTCAATTGCCTCCAAAAATACCCTCTTTCCCTCAAAATTGGCCTCATAATTTCCCTCCCTCAATGCCTAATTTATCTCATTCTCCTCCGCCGCCGTCCTCCGCCGTCTCCAACCCGTCATGGGTTGATGACTTTCTCGACTTCTCCACCGCCCGCCGTGGCCTCCACCGGAGATCCATTAGCGACTCCATTGCTTTTCTCGAGACCCCATCATTTTCCGACGAATGTCGCAACTCCTCCTCCGCCGTGGCCGCCGCCGTGCTTCGTGCTCCCCCGACCTTTGACCGCCTTGACGACGACCAGCTTATGTCCATGTTTACCGATGACATTTCCTTGGCGGTGTCGCCGTCGTCCAACCCTTCCACCCCATCCGACCAGAACAGTAATGACGATGAGAAGACGATGACAGTTCCGTCGGAGCCGCCGCCGCCGCCACCGCCATATCAGTTGAAGAAAGAACCTGGTGAGGTTGAATGCTCTTCTTCTCAATTACTGCACCAATCTCAACCTCCGCCGCCGTCTTCCGCCACTGATGCCGGTGATAACTCAAACCTTGATCCCAAGCGAGTTAAGAGAATTTTGGCAAATCGACAATCAGCACAAAGGTCGAGGGTCAGAAAATTGCAATACATTTCTGAGCTCGAGAGAAGTGTAACGACATTACAGACAGAAGTTTCAGCATTGTCCCCAAGAGTGGCATTTTTGGACCACCAAAGATTGATTCTAAATGTTGATAACAGTGCTCTTAAACAGAGAATTGCAGCTTTGACTCAAGATAAGATTTTCAAAGATGCTCATCAAGAGGCGTTAAAGAAGGAAATAGAGAGATTAAAGCAAGTTTATCACCAACAAGGGTTGAAGCAAATGGGAAGAAATCAAAATGGGGCGGCGCCGCCGTCGTCAGGGGATGGATCGCCGCCGCGGGCGGCTGAGATGGAGAACGAGTTGGCGGTAAGTTGA 963 50.99 MAQLPPKIPSFPQNWPHNFPPSMPNLSHSPPPPSSAVSNPSWVDDFLDFSTARRGLHRRSISDSIAFLETPSFSDECRNSSSAVAAAVLRAPPTFDRLDDDQLMSMFTDDISLAVSPSSNPSTPSDQNSNDDEKTMTVPSEPPPPPPPYQLKKEPGEVECSSSQLLHQSQPPPPSSATDAGDNSNLDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALTQDKIFKDAHQEALKKEIERLKQVYHQQGLKQMGRNQNGAAPPSSGDGSPPRAAEMENELAVS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37388305 37390767 - Sed0000931.1 Sed05g2536 715162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2536 320 MobiDBLite consensus disorder prediction 161 183 - -
Sed05g2536 320 MobiDBLite consensus disorder prediction 114 136 - -
Sed05g2536 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2536 320 MobiDBLite consensus disorder prediction 286 301 - -
Sed05g2536 320 FunFam Basic leucine zipper 61 188 261 - -
Sed05g2536 320 Gene3D - 188 261 - -
Sed05g2536 320 MobiDBLite consensus disorder prediction 1 37 - -
Sed05g2536 320 MobiDBLite consensus disorder prediction 138 152 - -
Sed05g2536 320 MobiDBLite consensus disorder prediction 1 42 - -
Sed05g2536 320 MobiDBLite consensus disorder prediction 114 187 - -
Sed05g2536 320 SUPERFAMILY Leucine zipper domain 189 243 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2536 320 PANTHER BASIC LEUCINE ZIPPER 34 1 310 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Sed05g2536 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2536 320 CDD bZIP_plant_RF2 190 240 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2536 320 Pfam bZIP transcription factor 189 234 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2536 320 SMART brlzneu 185 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2536 320 MobiDBLite consensus disorder prediction 282 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2047 Sed-Chr5:33729756 Sed05g2536 Sed-Chr5:37388305 9.10E-52 dispersed
Sed05g2048 Sed-Chr5:33729756 Sed05g2536 Sed-Chr5:37388305 9.10E-52 dispersed
Sed05g2536 Sed-Chr5:37388305 Sed05g2538 Sed-Chr5:37388305 2.10E-96 dispersed
Sed05g2536 Sed-Chr5:37388305 Sed05g2537 Sed-Chr5:37388305 2.00E-118 tandem
Sed04g2429 Sed-Chr4:37555257 Sed05g2536 Sed-Chr5:37388305 7.10E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38631 PF00170 bZIP_1 8.80E-10 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2536 - - - 0.0