Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2541 ATGTTTCTGAGAGCTCCGCTACTTAAAATTTCATCATTCTACCCGATCCCATGTCGTCCTCTGCTTCCCTCGTCTCTCTCTTCTTCAATCTGTTATTCTCATCGCACACCGTTTACTGTCCGATGCCATACATCTTTGCCAGCAGCCCACGAGCCATCATCTTCAGCTTCCTCTGAATTACCTGACGCGGCGGACAATCGCTGGAGGCCCATGTGTTTGTATTACACGCAGGACAAGTGCACAATGATGGATGACCCACTCCACGAAAAGAAGTTCAATCATGATATTGCCAGGGAGCTTAAGGTGGATATTGCTAGGTCAAACCATATGCAAACTCAGGACGTTGACTTTTTTTTGGTGCTTGATTTGGAGGGTAAAGTTGAAATAATTGAGTTTCCAGTCATCTTAGTTGATGCCAAGACAATGGGTGTTACAGGATTTTTCCACAGGTTTGTTAAGCCATCAAAAATGAGTGAGCGAAGGATAAATGAATACATTGAAGGAAAGTATGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTCTTCAACAGTTTGAAGATTGGCTGGGTGAACATCAGCTATGGAGGAAGGAACTGGGTGGTGGTCTTGATCGAGCGGCATTCGTGACATGTGGCAACTGGGATATAAAAACTCAGATCCCACATCAATGCAGCGTGTCGAATATAAAACTTCCTGACTATTTTATGGAGTGGATCAATATTAAAGATGTATATCTCAACTCTTACGAAAAGAAGGTACGAATAAACCATCCTCCTATCATCAATAGCATCATATATTTATCAATGCGAAACAAATGTATTTCTTTTAGGGTTTGGAGTTGCAAAATCAATCTTCTGCTGATGGTTTTGCTTCTCTTAAACTTCTGGGATAGATCATATGATGGGAATAGAGAACCAAACCCAAGATTACTCAAGAAGGAAAAATGA 972 41.77 MFLRAPLLKISSFYPIPCRPLLPSSLSSSICYSHRTPFTVRCHTSLPAAHEPSSSASSELPDAADNRWRPMCLYYTQDKCTMMDDPLHEKKFNHDIARELKVDIARSNHMQTQDVDFFLVLDLEGKVEIIEFPVILVDAKTMGVTGFFHRFVKPSKMSERRINEYIEGKYGKFGVDRVWHDTAILYKDVLQQFEDWLGEHQLWRKELGGGLDRAAFVTCGNWDIKTQIPHQCSVSNIKLPDYFMEWINIKDVYLNSYEKKVRINHPPIINSIIYLSMRNKCISFRVWSCKINLLLMVLLLLNFWDRSYDGNREPNPRLLKKEK 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37401896 37404566 - Sed0012116.2 Sed05g2541 715167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2541 323 Gene3D - 105 271 IPR036397 GO:0003676(InterPro)
Sed05g2541 323 SUPERFAMILY Ribonuclease H-like 114 259 IPR012337 -
Sed05g2541 323 CDD ERI-1_3'hExo_like 118 264 IPR047201 GO:0000175(InterPro)
Sed05g2541 323 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 56 259 IPR051274 GO:0000175(PANTHER)|GO:0000467(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2541 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2540 Sed-Chr5:37400791 Sed05g2541 Sed-Chr5:37401896 3.50E-155 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g171 . . . . . . . . . . . Cma09g00836 . Car09g00751 Sed05g2541 Cpe06g00667 . Bhi09g03472 Tan01g4356 Cmetu07g0939 . Hepe01g1415 Mch11g1036 . Cla11g01731 Cam11g1800 Cec11g1821 Cco11g1827 Clacu11g1959 Cmu11g1769 Cre11g2177 . . Cone14ag1048 . Lsi04g02040 Csa04g02310 Chy07g00046 Cme07g00564 . . . . . . . . . . Cmo09g00831 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011810 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 26