Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2552 ATGGCGGCACCTTCAATTACTTGCTTCGCTCTTCCTTCTAAGTTCACAAATCTTTCCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCAGATTCTGCCTTCTCCAATGGGTGCGTGTCCATGAGTAAAGCTCAGAGGCCACTTCGTTACTTTGTGGTTTGCGAGGCGGCTGAGAAACGGCGGCTTTACAACAAAGCCAGGAAATCTGAAATCAAAACCAGGATCAAGAAGGCTTTGGAAGCTTTGGATGACCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCTTGCCGATCGAGAAGCTCATCACAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGTACCGGAACACTGCAGCACGTCGAAAATCTCGGCTTGCCAGACGAAAGAAAGCTGTAGAAATCCAGCATGGATGGTACACCCCTGCTTCACCAGCAGCTGCCTAA 462 47.84 MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37440411 37443056 + Sed0026173.1 Sed05g2552 715178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2552 153 Coils Coil 68 88 - -
Sed05g2552 153 Hamap Small ribosomal subunit protein bS20 [rpsT]. 41 137 IPR002583 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed05g2552 153 SUPERFAMILY Ribosomal protein S20 56 149 IPR036510 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed05g2552 153 NCBIfam 30S ribosomal protein S20 56 134 IPR002583 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed05g2552 153 Gene3D Ribosomal protein S20 54 153 IPR036510 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed05g2552 153 FunFam 30S ribosomal protein S20, chloroplastic 53 153 - -
Sed05g2552 153 Pfam Ribosomal protein S20 56 134 IPR002583 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed05g2552 153 PANTHER 30S RIBOSOMAL PROTEIN S20 56 146 IPR002583 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0015935(PANTHER)|GO:0070181(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2552 K02968 - - csv:101213298 188.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2419 Sed-Chr4:37474247 Sed05g2552 Sed-Chr5:37440411 3.50E-48 dispersed
Sed04g2418 Sed-Chr4:37474247 Sed05g2552 Sed-Chr5:37440411 5.90E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g183 Blo03g00670 . . Bda09g00525 . Bpe08g01012 . . . . Cma01g01223 Cma09g00845 Car01g01045 Car09g00758 Sed05g2552 Cpe06g00673 Cpe02g00691 Bhi09g03459 Tan01g4369 Cmetu07g0293 . Hepe01g1406 Mch11g1044 . Cla11g01738 Cam11g1808 Cec11g1828 Cco11g1834 Clacu11g1968 Cmu11g1778 Cre11g2184 Cone6ag0168 Cone9ag0192 . . Lsi04g02048 Csa04g02320 Chy07g00054 Cme07g00573 . . . . . . . . . Cmo01g01276 Cmo09g00839 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006196 2 1 1 0 2 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 1 1 34