Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2557 ATGTCTGATGTGGCGAGTATAGCCGAGGCAGTAGCAGCAAGGTTTAGTTATTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATTAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTATCACAATGTCGATCTCCCTACATTACTGAGTACTACGGTTCTTATCTCCACCAGACAAAGTTGTGGATAATAATGGAATATATGGCTGGGGGATCTGTAGCAGATCTGTTGCAGTCTGGACCACCACTTGATGAAACATCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATCTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTAGCAGATTTTGGTGTTTCTGCTGAATTAACAAGGACAATATCTAGGAGAAAGACATTTGTAGGAACTCCATTTTGGATGGCACCAGAGGTAATTCAGAATTCTGACGGATACAATGAGAAGGCAGACATCTGGTCGGTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAACCTCCACTTGCTGATCTTCATCCCATGCGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCGCTCTGTCTGAAGAAAATACCTGCTGAGAGGCTCAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAGGAATGCCAGGAAGAGTCCCAGGCTTCAGGAAAGAATAAGAGAACGTCCAAAGTACCAAATAAAGGAAGATGTAGAAACACCAACTAATGGTCCTAGAGCTATAAATGAAACATCGGACACGGTCAAAGTATCGAGAAATGTAAGAGAAGAAACTGTGCGTGCCAGCAACCAAAGTAAAATTCCAAAGAATGCAGGATGGGACTTTAGCATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTTGTAAAGCCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAAGCTGCATCTAGTAGAGTTCCAGAGAGTGGTAACCGGCTAGCAGCATCTGGAAATGCACCACGTAACATTGCAGAAAACGCTAGAGATTCATACAATTTGGGGAATGCAAGTGAAGATGAAGAGTTATCGGTAAGTGGTTTGGGAACAGTTGTGATCCGGTCTCCCAAACCATCTCAGACATCTACTCAATTTCATAGTGAAAGCATTCCGTCTGGAAATGCACAAGCTTATTTTGAGGACACATCTCTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGGTTCCGTTTCTCCTCAGACTCCTAAATTCAGACCGGGAACTCAAGAAAAGACTTCAAGTCTGTCTCCTGAAGATAGTGCATTTAACCTTGCGGAGGCAAAAGCTGCAATTCAAGCAGGATTGAAGAAAGCTAATGTAAGGGAAAGATCTGCTAATCATAAACTCAATGTCAGGAAGGAAAATAAAACAGAGCAAACAGTGAGTAGCTTTGACTCTTCGAGGCATTCTCGTGAACTCTTTGATGCAAATAGATCATTGTCAAAACCTTCTCTATCAATTGACGATGAAGAAGGTGCCAAAATAGCATTGTCTTCTGCACCTTTATCGATACTGTTTATGTCATCCTTGAAAGAGGTAATTGCGGATGATTCGGAAAGATCACCTTCTCGTACTGTAATTAATGCACTTATAAATATGGAACACCTAAAACCTGGATCATGTGAGGTTCTAGTTACTAAGTTGCTCCAGAATTTGGCCAGTTCAAAGGAATCTTCACTGAAAGACTTGCAAGACTTGGCAACTCGCTTATTAATCAAACAAAAGATAGTTCCTGAGGATACTCAAACTGTCGCAGATTCTGATAGTCGCAAAACGCAACCGAGCAGGGAACTTCATTCACATTCAAATTTGAGCTCGCTTGCTAGATTTTTGCTCTCCAGATGGCAAGGACAGGTGTCAAGGGATTTGAGTCCAGCTTAA 2082 41.35 MSDVASIAEAVAARFSYLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDETSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAELTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSVGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERLSAKELLKHRFIRNARKSPRLQERIRERPKYQIKEDVETPTNGPRAINETSDTVKVSRNVREETVRASNQSKIPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAASSRVPESGNRLAASGNAPRNIAENARDSYNLGNASEDEELSVSGLGTVVIRSPKPSQTSTQFHSESIPSGNAQAYFEDTSLSGTVVMRGQRDGSVSPQTPKFRPGTQEKTSSLSPEDSAFNLAEAKAAIQAGLKKANVRERSANHKLNVRKENKTEQTVSSFDSSRHSRELFDANRSLSKPSLSIDDEEGAKIALSSAPLSILFMSSLKEVIADDSERSPSRTVINALINMEHLKPGSCEVLVTKLLQNLASSKESSLKDLQDLATRLLIKQKIVPEDTQTVADSDSRKTQPSRELHSHSNLSSLARFLLSRWQGQVSRDLSPA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37455558 37469840 - Sed0017869.1 Sed05g2557 715183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2557 693 Pfam Protein kinase domain 17 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2557 693 Coils Coil 41 68 - -
Sed05g2557 693 MobiDBLite consensus disorder prediction 319 389 - -
Sed05g2557 693 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2557 693 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Sed05g2557 693 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2557 693 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Sed05g2557 693 CDD STKc_MST3_like 14 287 - -
Sed05g2557 693 MobiDBLite consensus disorder prediction 458 485 - -
Sed05g2557 693 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
Sed05g2557 693 MobiDBLite consensus disorder prediction 515 535 - -
Sed05g2557 693 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Sed05g2557 693 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 650 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Sed05g2557 693 MobiDBLite consensus disorder prediction 420 440 - -
Sed05g2557 693 MobiDBLite consensus disorder prediction 648 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2557 Sed-Chr5:37455558 Sed07g2041 Sed-Chr7:35534200 6.40E-66 dispersed
Sed14g1340 Sed-Chr14:22237849 Sed05g2557 Sed-Chr5:37455558 5.50E-31 dispersed
Sed04g2410 Sed-Chr4:37424817 Sed05g2557 Sed-Chr5:37455558 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79237 PF00069 Pkinase 5.10E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2557 K08838 - csv:101214412 1177.16