Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2558 ATGGCTGGAAAACAGATTCTCAACAAGATGAAGGAAAAAGTGCTGTGTTCATCGGATCCAGACTCTGGAAAAGGAAAAAGCAAGTTGTCCAAGCATGTCACACATGGCTTTCACTTGGTGGAAGGGAAATCAAACCATGCCATGGAAGATTATGTGGTTGCAGATTTTAAGCAAGTCGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGTCATTTGAGCAATGCTATCCCCGACTTCTTACAGTCCCATTTATTTTCTATTATAATAAATGAGCCTGATTTCTGGAGCAATCCAAAGAGTGCAATCAGGAAAGCATACAGGGAAACTGATGCTTACATTTTAGACAAGGCCGTTGATTTTAGTCATGGGGGTTCAACTGCCGTTACAGCCATATTGATTGACTGTAAGAAACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTAGGAAGGGTAAGGCCAGTCAATTATCAGTCGATCATGAGCCGAGCGTTGAAAGAAAAAGCATTGAGAACAGAGGTGGTTTTGTAACACGCTTTCCTGGAGATGTTCCACGTGTTGACGGTCAGCTGGCTGTCGCAAGGGCGTTTGGCGATAGGAGCTTGAAGAAACACTTGAGCTCAGAGCCTGATGTGTTTGAGGAGGTAATAGATGATGAGACAGAGTTCGTTATCTTGGCAAGCGATGGATTGTGGAAGGTGATGTCGAACGGGGAAGCTGTAGAGTCTATCAGGCATATTAAAGACGCTCAGGCAGCTGCCAAGCACTTGACTGAGGAGGCTCTCAAGAGAAAGAGCAAAGATGATATTTCTTGTATAGTTGTGAGATTTCACTGA 849 44.17 MAGKQILNKMKEKVLCSSDPDSGKGKSKLSKHVTHGFHLVEGKSNHAMEDYVVADFKQVDHHELGLFAIFDGHLSNAIPDFLQSHLFSIIINEPDFWSNPKSAIRKAYRETDAYILDKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICRKGKASQLSVDHEPSVERKSIENRGGFVTRFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVFEEVIDDETEFVILASDGLWKVMSNGEAVESIRHIKDAQAAAKHLTEEALKRKSKDDISCIVVRFH 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37472780 37476329 + Sed0014512.1 Sed05g2558 715184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2558 282 FunFam Probable protein phosphatase 2C 39 24 282 - -
Sed05g2558 282 CDD PP2Cc 42 281 IPR001932 -
Sed05g2558 282 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Sed05g2558 282 Pfam Protein phosphatase 2C 47 274 IPR001932 -
Sed05g2558 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Sed05g2558 282 SMART PP2C_4 24 279 IPR001932 -
Sed05g2558 282 Gene3D - 29 282 IPR036457 -
Sed05g2558 282 PANTHER PROTEIN PHOSPHATASE 31 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1939 Sed-Chr5:32760378 Sed05g2558 Sed-Chr5:37472780 1.00E-101 dispersed
Sed05g2558 Sed-Chr5:37472780 Sed05g2560 Sed-Chr5:37472780 5.90E-135 dispersed
Sed05g2558 Sed-Chr5:37472780 Sed05g2559 Sed-Chr5:37472780 2.60E-135 tandem
Sed04g2407 Sed-Chr4:37377669 Sed05g2558 Sed-Chr5:37472780 2.60E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2558 K17506 - csv:101215129 489.574