Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2559 ATGGCTGGAAAACAGATTCTCAACAAGATGAAGGAAAAAGTGCTGTGTTCATCGGATCCAGACTCTGGAAAAGGAAAAAGCAAGTTGTCCAAGCATGTCACACATGGCTTTCACTTGGTGGAAGGGAAATCAAACCATGCCATGGAAGATTATGTGGTTGCAGATTTTAAGCAAGTCGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGTCATTTGAGCAATGCTATCCCCGACTTCTTACAGTCCCATTTATTTTCTATTATAATAAATGAGCCTGATTTCTGGAGCAATCCAAAGAGTGCAATCAGGAAAGCATACAGGGAAACTGATGCTTACATTTTAGACAAGGCCGTTGATTTTAGTCATGGGGGTTCAACTGCCGTTACAGCCATATTGATTGACTGTAAGAAACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTAGGAAGGGTAAGGCCAGTCAATTATCAGTCGATCATGAGCCGAGCGTTGAAAGAAAAAGCATTGAGAACAGAGGTGGTTTTGTAACACGCTTTCCTGGAGATGTTCCACGTGTTGACGGTCAGCTGGCTGTCGCAAGGGCGTTTGGCGATAGGAGCTTGAAGAAACACTTGAGCTCAGAGCCTGATGTGTTTGAGGAGGTAATAGATGATGAGACAGAGTTCGTTATCTTGGCAAGCGATGGATTGTGGAAGTTAATCTGCAATTTCAGGTGA 732 43.72 MAGKQILNKMKEKVLCSSDPDSGKGKSKLSKHVTHGFHLVEGKSNHAMEDYVVADFKQVDHHELGLFAIFDGHLSNAIPDFLQSHLFSIIINEPDFWSNPKSAIRKAYRETDAYILDKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICRKGKASQLSVDHEPSVERKSIENRGGFVTRFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVFEEVIDDETEFVILASDGLWKLICNFR 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37472780 37476329 + Sed0014512.2 Sed05g2559 715185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2559 243 Pfam Protein phosphatase 2C 47 239 IPR001932 -
Sed05g2559 243 SUPERFAMILY PP2C-like 30 240 IPR036457 -
Sed05g2559 243 PANTHER PROTEIN PHOSPHATASE 31 241 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g2559 243 Gene3D - 15 242 IPR036457 -
Sed05g2559 243 SMART PP2C_4 24 243 IPR001932 -
Sed05g2559 243 FunFam Probable protein phosphatase 2C 39 24 242 - -
Sed05g2559 243 CDD PP2Cc 42 236 IPR001932 -
Sed05g2559 243 ProSiteProfiles PPM-type phosphatase domain profile. 34 243 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2407 Sed-Chr4:37377669 Sed05g2559 Sed-Chr5:37472780 3.70E-121 dispersed
Sed05g2559 Sed-Chr5:37472780 Sed07g1193 Sed-Chr7:8923313 1.40E-71 dispersed
Sed05g2558 Sed-Chr5:37472780 Sed05g2559 Sed-Chr5:37472780 2.60E-135 tandem
Sed05g2559 Sed-Chr5:37472780 Sed05g2560 Sed-Chr5:37472780 1.70E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2559 K17506 - csv:101215129 412.149