Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2560 ATGGCTGGAAAACAGATTCTCAACAAGATGAAGGAAAAAGTGCTGTGTTCATCGGATCCAGACTCTGGAAAAGGAAAAAGCAAGTTGTCCAAGCATGTCACACATGGCTTTCACTTGGTGGAAGGGAAATCAAACCATGCCATGGAAGATTATGTGGTTGCAGATTTTAAGCAAGTCGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGTCATTTGAGCAATGCTATCCCCGACTTCTTACAGTCCCATTTATTTTCTATTATAATAAATGAGCCTGATTTCTGGAGCAATCCAAAGAGTGCAATCAGGAAAGCATACAGGGAAACTGATGCTTACATTTTAGACAAGGCCGTTGATTTTAGTCATGGGGGTTCAACTGCCGTTACAGCCATATTGATTGACTGTAAGAAACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTAGGAAGGGTAAGGCCAGTCAATTATCAGTCGATCATGAGCCGAGCGTTGAAAGAAAAAGCATTGAGAACAGAGGTGGTTTTGTAACACGCTTTCCTGGAGATGTTCCACGTGTTGACGGTCAGCTGGCTGTCGCAAGGGCGTTTGGCGATAGGAGCTTGAAGAAACACTTGAGCTCAGAGCCTGATGTGTTTGAGGAGGTAATAGATGATGAGACAGAGTTCGTTATCTTGGCAAGCGATGGATTGTGGAAGGTTGGTGTCGATCTTCTGAAAGTTTTTATGGAACACTAG 750 43.73 MAGKQILNKMKEKVLCSSDPDSGKGKSKLSKHVTHGFHLVEGKSNHAMEDYVVADFKQVDHHELGLFAIFDGHLSNAIPDFLQSHLFSIIINEPDFWSNPKSAIRKAYRETDAYILDKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICRKGKASQLSVDHEPSVERKSIENRGGFVTRFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVFEEVIDDETEFVILASDGLWKVGVDLLKVFMEH 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37472780 37476329 + Sed0014512.3 Sed05g2560 715186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2560 249 PANTHER PROTEIN PHOSPHATASE 31 238 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g2560 249 SUPERFAMILY PP2C-like 31 238 IPR036457 -
Sed05g2560 249 SMART PP2C_4 24 248 IPR001932 -
Sed05g2560 249 FunFam Probable protein phosphatase 2C 39 24 244 - -
Sed05g2560 249 CDD PP2Cc 42 238 IPR001932 -
Sed05g2560 249 ProSiteProfiles PPM-type phosphatase domain profile. 34 249 IPR001932 -
Sed05g2560 249 Gene3D - 15 242 IPR036457 -
Sed05g2560 249 Pfam Protein phosphatase 2C 47 238 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2558 Sed-Chr5:37472780 Sed05g2560 Sed-Chr5:37472780 5.90E-135 dispersed
Sed05g2560 Sed-Chr5:37472780 Sed07g1193 Sed-Chr7:8923313 5.30E-71 dispersed
Sed05g2559 Sed-Chr5:37472780 Sed05g2560 Sed-Chr5:37472780 1.70E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2560 K17506 - csv:101215129 410.994