Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2572 ATGGCTCTTCAAACTGCTTCTCTTGTTTCTCCTGCTCTTTCTTTGCCCAAAGAGGGGAAGTCTAGTGTTTGCTTGAAGGATTCCAGTTTCTTTGGAATATCATTCTCAGGCAGTTCATCTACATTTAGGTGTAAGAGAGAATTGAAGCAGCAGGTGGGTGGCATTAGGGCTCAGACAACGGCTACCACGACTCCAGCTATTACCAAAGCCAGTCCAGATGGGAAGAAAACTCTTAGAAAGGGCAGTGTTGTGATCACTGGAGCTTCTTCTGGCTTGGGTCTTGCCACAGCCAAGGCTCTAGCTGAAACTGGAAAATGGCATGTCATTATGGCTTGCAGGGATTTTCTCAAGGCTGAAAGAGCTGCCAAATCTGCTGGGATTACCAAGGAAAACTACACTGTCATGCATCTCGACCTTTCGTCGCTTGATAGCGTTCGCCAGTTCGTCGACAACTTCAGGCAGTCGGGCAGGCCGCTTGATGTACTGGTGTGCAATGCTGCTGTTTACCTCCCAATTGCTAAAGAACCTACCTTCACTGCTGAAGGTTTTGAACTTAGTGTTGGAACTAACCATCTTGGACACTTTCTCCTCTCCCGTTTGTTGTTAGAGGATTTGAACAAATCTGATTACCCTTCCAAGCGCCTCATCATTGTTGGATCAATAACCGGGAACACAAATACCTTGGCTGGAAATGTACCTCCTAAGGCCAACCTAGGAGACCTCAGGGGACTTGCTGGAGGAATAAATGGGCTAAACAGCTCGGCCATGATTGACGGTGGTGAGTTCGACGGTGCTAAGGCGTACAAGGATAGCAAGGTGTGCAACATGCTCACTATGCAAGAGTTCCACAGGCGGTACCACGAGGAAACCGGAATCACATTTGCTTCCCTCTACCCGGGATGCATTGCGACAACTGGTTTGTTTAGAGAGCATATTCCATTGTTCAGGATACTCTTCCCTTCATTCCAAAAGTACATCACCAAGGGTTATGTTTCGGAAGAAGAATCAGGAAAAAGATTGGCTCAGGTTGTGAGCGAGCCAAGCTTGACAAAATCAGGTGTGTATTGGAGCTGGAACAAGAACTCGGCTTCATTTGAGAACCAGTTGTCGGAGGAAGCTAGTGATCCAGAGAAGGCTCGCAGAGTGTGGGAGGTCAGTGAGAAACTTGTTGGTTTGGCCTAA 1182 47.55 MALQTASLVSPALSLPKEGKSSVCLKDSSFFGISFSGSSSTFRCKRELKQQVGGIRAQTTATTTPAITKASPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGITKENYTVMHLDLSSLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPIAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGINGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRILFPSFQKYITKGYVSEEESGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDPEKARRVWEVSEKLVGLA 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37540848 37543306 + Sed0001792.1 Sed05g2572 715198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2572 393 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 393 IPR005979 GO:0016630(InterPro)
Sed05g2572 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 78 361 IPR036291 -
Sed05g2572 393 Pfam short chain dehydrogenase 83 225 IPR002347 -
Sed05g2572 393 NCBIfam protochlorophyllide reductase 79 393 IPR005979 GO:0016630(InterPro)
Sed05g2572 393 CDD LPOR_like_SDR_c_like 80 392 - -
Sed05g2572 393 Gene3D - 68 393 - -
Sed05g2572 393 PRINTS Glucose/ribitol dehydrogenase family signature 290 307 IPR002347 -
Sed05g2572 393 PRINTS Glucose/ribitol dehydrogenase family signature 82 99 IPR002347 -
Sed05g2572 393 PRINTS Glucose/ribitol dehydrogenase family signature 157 168 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2572 K00218 - - csv:101208554 695.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3122 Sed-Chr4:42076065 Sed05g2572 Sed-Chr5:37540848 4.60E-202 dispersed
Sed05g2572 Sed-Chr5:37540848 Sed07g1607 Sed-Chr7:13167349 1.90E-27 dispersed
Sed05g2572 Sed-Chr5:37540848 Sed05g0483 Sed-Chr5:3343121 8.20E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g260 Blo03g00643 Blo03g01537 Bda07g00287 . . Bpe08g01033 . . . . Cma01g01197 . Car01g01022 Car09g00792 Sed05g2572 Cpe06g00703 Cpe02g00712 Bhi09g03395 Tan01g4418 Cmetu07g1898 . Hepe01g1371 Mch11g1088 . . . . . . . . Cone6ag0131 Cone9ag0156 Cone14ag1074 Cone15ag1067 Lsi04g01319 Csa04g02361 Chy07g00090 . . . . . Bpe11g00490 . Bma07g01189 . . Cmo01g01251 Cmo09g00869 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003266 1 2 1 1 2 1 3 1 1 2 1 0 2 2 1 3 0 4 3 1 1 2 2 2 2 1 2 2 2 2 50