Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g2580 | ATGTGCATGAGGTTCTTCATTTCTTCGTATTCGCTAGCCATGGCCTTCATGTTGGAACTGGTTTTCACAACTTTGGCTTTGGCAGCGACGTCATTTTTCATCTTCTCTGCGTTATATGACACTATTTGCTGCTATTGGTTGACTCCTCGACGCATAAAAAACAAGATGGCTAAGCAAGGTGTGCGTGGCCCCAAACCCCGCCCTCTCCTCGGCAACATCCTCGACATCTCTGACTTCCTTTCAAAGTCCACCTCCTCCGACATGCCCTCCATCTCCCACGACCTCGTCCCCCGTCTCCTCCCCCACTTCCTCGCCTGGTCCGCACAATATGGGAAGAGATTTATCTTTTGGAATGGAATTGAACCAAGAATGTGTTTGATGGAAACGGATTTGATCAAAGAACTTTTGTCCAAACACAACATGGTTTCAGGCAAGTCATGGCTCCAACAAGAGGGATCTAAGCACTTTATTGGCCGGGGTCTCTTAATGGCCAACGGCCGAAACTGGTCTCATCAACGTCATATCGTCGCGCCGGCTTTTGTTGGTGATCGACTCAAGAGCTACGCGAGGTATATGGTGGAATGCACAAGGGAAATGCTTCAATCAATAGAAAACGAGGTAAAATCGGGGCGATCGGAGTTGGAAATCGGCGAGTATATGACCAGACTCACAGCTGATATTATCTCCAGAACCGAGTTTGAAAGCAGCTATGTAAAGGGAAAACAAATCTTTGATTTGCTTACAGTTTTACAAAATCTTTGTGCCCAGGCCAGTCGCCACCTAATCCTTCCCGGTAGCCGATTTTTTCCAAGTAAATATAACAGAGAGATAAAGACATTGAAGGTTCAAGTGGAGAAATTATTAATGGAGATAATAGAGAGCAGAAAGGAGAGTGTGGAGATTGGAAGTGGCAGTTCATATGGAAATGATTTATTAGGAATGTTGCTAAATGAGATGCAGAAGAAAAAAGATGGAAATGGTTTGAGTTTGAATTTGCAGATTATAATGGATGAATGCAAGACTTTCTTCTTTGCTGGGCATGAAACAACAGCTCTTCTTCTCACTTGGACTGTAATGTTATTAGCCTCCAACCCATCTTGGCAGGAAAAGGTTCGAGCCGAGGTCATGGCCGTTTGCAATGGCGAAACTCCGTCTCTCGATCATCTACCCAAACTCTCGTTGCTGGGTATGGTGATAAATGAATCATTGAGGCTATATCCACCGGCAACTATTCTTCCAAGAATGGCATTTGAAGATATAAGACTTGGTGATTTAGAGATCCCAAAAGGGTTGTCCATATGGATCCCAGTGCTAGCCCTTCACCACAGCGAAGAGTTATGGGGAAAAGATGCAAATGAGTTCAACCCTCAAAGGTTTTCCAACTCAAAACCCTTCACTTCTGGAAGATTTATCCCTTTCGCTTCGGGCCCCCGCAACTGCGTCGGCCAATCTTTTGCTATTATGGAAGCTAAGATCATCTTGGCCATGCTCATCTCCAAGTTTACCTTCACAATCTCACCAAGTTATCGCCATTCTCCCATTGTTGTCCTCACTATAAAACCTAAATATGGTCTTCAACTTATCATCAACCCCCTTTAA | 1599 | 44.53 | MCMRFFISSYSLAMAFMLELVFTTLALAATSFFIFSALYDTICCYWLTPRRIKNKMAKQGVRGPKPRPLLGNILDISDFLSKSTSSDMPSISHDLVPRLLPHFLAWSAQYGKRFIFWNGIEPRMCLMETDLIKELLSKHNMVSGKSWLQQEGSKHFIGRGLLMANGRNWSHQRHIVAPAFVGDRLKSYARYMVECTREMLQSIENEVKSGRSELEIGEYMTRLTADIISRTEFESSYVKGKQIFDLLTVLQNLCAQASRHLILPGSRFFPSKYNREIKTLKVQVEKLLMEIIESRKESVEIGSGSSYGNDLLGMLLNEMQKKKDGNGLSLNLQIIMDECKTFFFAGHETTALLLTWTVMLLASNPSWQEKVRAEVMAVCNGETPSLDHLPKLSLLGMVINESLRLYPPATILPRMAFEDIRLGDLEIPKGLSIWIPVLALHHSEELWGKDANEFNPQRFSNSKPFTSGRFIPFASGPRNCVGQSFAIMEAKIILAMLISKFTFTISPSYRHSPIVVLTIKPKYGLQLIINPL | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 37566261 | 37568551 | + | Sed0003015.1 | Sed05g2580 | 715206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g2580 | 532 | Coils | Coil | 277 | 297 | - | - | |
| Sed05g2580 | 532 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 32 | 525 | IPR050665 | GO:0004497(PANTHER) | |
| Sed05g2580 | 532 | PRINTS | P450 superfamily signature | 345 | 362 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | P450 superfamily signature | 397 | 408 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | P450 superfamily signature | 480 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | P450 superfamily signature | 471 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | Pfam | Cytochrome P450 | 107 | 509 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | Gene3D | Cytochrome P450 | 45 | 532 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | E-class P450 group I signature | 480 | 503 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | E-class P450 group I signature | 107 | 126 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | E-class P450 group I signature | 334 | 351 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | E-class P450 group I signature | 354 | 380 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | E-class P450 group I signature | 437 | 461 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | PRINTS | E-class P450 group I signature | 470 | 480 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2580 | 532 | SUPERFAMILY | Cytochrome P450 | 63 | 530 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g0502 | Sed-Chr5:3448947 | Sed05g2580 | Sed-Chr5:37566261 | 2.80E-90 | dispersed | |
| Sed05g2580 | Sed-Chr5:37566261 | Sed11g2101 | Sed-Chr11:34922951 | 7.20E-267 | dispersed | |
| Sed05g2580 | Sed-Chr5:37566261 | Sed07g2030 | Sed-Chr7:35267817 | 9.80E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g2580 | K10717 | - | csv:101215037 | 893.649 |