Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g2586 | ATGGAGATTCTCTCTGTTACCCTGTTATTAACAGTACTCTTATTTTTCTCTGTTTTTTTCTTTTCCTTCAAGAGAAAAAATGAAACCCAAAACTCCCAAAAATCTCTTAGGCTTCCTCCTGGTTCCATGGGACTGCCATGGATTGGACAAACCTTGCAGCTTTATTCTCAAGACCCCAACATATTTTTCTCACAAAAACAGAGAAGATATGGAGAGATTTTTAAGAGCAACATTTTGGGATATCCTTGTGTGATGCTGGGCAGCGCCGCCGCAGCCCGGTTCGTTTTGGTGACCAACGCCCATTTATTCCGGCCGACGTATCCCAAAAGCAAAGAAACGTTGATCGGACCGGCGGCGCTTTTCTTCCACCAGGGAAATTACCATTCTAACCTCCGGAAGATGGTTCAAAACTCCCTCTCTCTTGAACGCCTCAGAAACCTTGTCCCTCTCATTGAAGCCGCTGCCATTTCCGCCACTGACTCGTGGGCCGCCGCCGGCCACGTCATTAACACCTTCCTCCAAATGAAAAAGTATTCTTTTGAGGTGGGAATTGTAGCAGTGTTTGGTAAATTAGAAAAGCATTACAGCGAGAAGCTAAAAGAAAACTACAGCATATTAAACAAAGGCTACAACTCTTTTCCAACCAAGCTACCAGGAACAGCATATTCTAAAGCATTAACAGCAAGGAAGAAGCTGAGGGAGATTCTGGGAGAGATAATAATGGAGAGGAGAGAAAAAAGAGTAACAGAGAAAGATTTGGTGGGACATCTTTTGAACTTCAGAGATCAAAATGGTGAAACTTTAACTGAGGATCAGATCGTCGACAACGTCGTCGGCGTTCTGTTTGCCGCCCACGACACCACCGCCACTGTACTCACCTGGATTCTCAAGTATCTTCATCACAATTTTAAGCCCTTTCAGGCTGTCCGAGAAGAGCAGATGGAGATATATAGAAGAAATGGAGAAGGAAAGGTTCCTCTATCTTGGTCTCAGATTAAGGACATGCCCTTTACTTATAGGGTTGTATTAGAAAGCTTGAGGATGGCAAGCATTATATCCTTCACTTTTAGGGAGGCAGTGGTTGATGTGGAATATAAAGGGTACCTAATACCAAAGGGTTGGAAGGTTATGCCCTTGTTCAGGAATATTCATCACAACCCTGACTACTTCTCTGATCCTCAAATCTTTGAACCCTCTAGATTTGAGGTGGCTCCAAAGCCCAATACATTCATGCCATTTGGAAATGGAGTACACTCCTGCCCAGGAAATGAGCTTGCCAAGCTGGAGATCCTCATCCTACTTCATCACCTCGTTACAAAATTTAGGTGGGAAGTTGTGGGATCAGAAAGCGGGGTTGAATATGGGCCATTCCCAGTGCCTGTCCACGGGCTACCGGCCACATTTTTCAAACAAACAACAACCAACCAATAG | 1431 | 44.44 | MEILSVTLLLTVLLFFSVFFFSFKRKNETQNSQKSLRLPPGSMGLPWIGQTLQLYSQDPNIFFSQKQRRYGEIFKSNILGYPCVMLGSAAAARFVLVTNAHLFRPTYPKSKETLIGPAALFFHQGNYHSNLRKMVQNSLSLERLRNLVPLIEAAAISATDSWAAAGHVINTFLQMKKYSFEVGIVAVFGKLEKHYSEKLKENYSILNKGYNSFPTKLPGTAYSKALTARKKLREILGEIIMERREKRVTEKDLVGHLLNFRDQNGETLTEDQIVDNVVGVLFAAHDTTATVLTWILKYLHHNFKPFQAVREEQMEIYRRNGEGKVPLSWSQIKDMPFTYRVVLESLRMASIISFTFREAVVDVEYKGYLIPKGWKVMPLFRNIHHNPDYFSDPQIFEPSRFEVAPKPNTFMPFGNGVHSCPGNELAKLEILILLHHLVTKFRWEVVGSESGVEYGPFPVPVHGLPATFFKQTTTNQ | 476 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 37601502 | 37605256 | + | Sed0010966.1 | Sed05g2586 | 715212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g2586 | 476 | FunFam | Abscisic acid 8 | 28 | 470 | - | - | |
| Sed05g2586 | 476 | Pfam | Cytochrome P450 | 39 | 446 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | CDD | CYP90-like | 67 | 465 | - | - | |
| Sed05g2586 | 476 | PRINTS | P450 superfamily signature | 411 | 420 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | P450 superfamily signature | 340 | 351 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | P450 superfamily signature | 283 | 300 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | P450 superfamily signature | 420 | 431 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | SUPERFAMILY | Cytochrome P450 | 33 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 413 | 422 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed05g2586 | 476 | Gene3D | Cytochrome P450 | 27 | 470 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PANTHER | CYTOCHROME P450 26 | 37 | 448 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Sed05g2586 | 476 | PRINTS | E-class P450 group I signature | 420 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | E-class P450 group I signature | 339 | 357 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | E-class P450 group I signature | 410 | 420 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | E-class P450 group I signature | 379 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | E-class P450 group I signature | 272 | 289 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g2586 | 476 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g2586 | Sed-Chr5:37601502 | Sed10g1255 | Sed-Chr10:27194885 | 1.30E-163 | dispersed | |
| Sed05g2586 | Sed-Chr5:37601502 | Sed13g1742 | Sed-Chr13:22400999 | 2.40E-181 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g2586 | K09843 | - | csv:101219389 | 816.224 |