Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2587 ATGTCCGCCAACCACCACCTTTGGGCATTCCTCAACTCCGGAAGCGATGTCGAAGATGAAAACGACAAAACCGCCTCCAAAACCGGCCTCTTACCTCCTCCGCAGCCACCGCTGACGGTAGGGAAGAAGAGGGCGGTCACGGAGTCGTCGGATCATGAGATTCATATTTGGACGGAGAGGGAGAGGAGGAAGAAGATGAGGAATATGTTCTCTAATCTTCATGCTTTGCTTCCTCACCTCCCTTCTAAGGCAGACAAATCAACTATCGTGGACGAAGCTGTAAATTACATAAAAACTTTACAACAAACCCTCCAAAAACTCCAAAACCAAAAGTTGGAAAAGCTTCAAAACAATAACAACAACAGCAACAACGTTGCAGCTCATTACCATCCTCAACAACAACCATCCTCAACCACCAACCACATTTCCTCCACTCTACTTTCTACCGCCGCCGCCGCAACTGCCAATGTTATCGACACTCTTCCACCGCCGCCGCCCGAGGGTACTATTACGGCCTTCCAGACTTGGACCTCCTCCAACCTCGTGCTGAGCGTGTGCGGGGGCGACGCCCATTTCTGCGTCTGCTCGGTCAAGAAGCCCGGCCTGTTCGCGGCCGTTTGTTATGTTCTTGATAAGCATCAGATTGAGGTTGTTTCGGCTCATGTCTCCTCTGATTTCCATCGCACCTTCTTTATGATTCAAGCCCATGTGAATGGAGATTGCAATGAATTCGGGGCGGCGATGGTGGCGGAAGAAATATTCAAGCAAGCTGCAGGGGAGATCATCTTCTGGCTGTCTACTTGA 804 50.37 MSANHHLWAFLNSGSDVEDENDKTASKTGLLPPPQPPLTVGKKRAVTESSDHEIHIWTERERRKKMRNMFSNLHALLPHLPSKADKSTIVDEAVNYIKTLQQTLQKLQNQKLEKLQNNNNNSNNVAAHYHPQQQPSSTTNHISSTLLSTAAAATANVIDTLPPPPPEGTITAFQTWTSSNLVLSVCGGDAHFCVCSVKKPGLFAAVCYVLDKHQIEVVSAHVSSDFHRTFFMIQAHVNGDCNEFGAAMVAEEIFKQAAGEIIFWLST 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37614620 37617552 + Sed0005157.1 Sed05g2587 715213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2587 267 CDD bHLH_AtbHLH_like 55 108 IPR045239 -
Sed05g2587 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 111 IPR036638 GO:0046983(InterPro)
Sed05g2587 267 CDD ACT_UUR-ACR-like 181 243 - -
Sed05g2587 267 Pfam Helix-loop-helix DNA-binding domain 55 101 IPR011598 GO:0046983(InterPro)
Sed05g2587 267 Coils Coil 90 125 - -
Sed05g2587 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983(InterPro)
Sed05g2587 267 MobiDBLite consensus disorder prediction 117 140 - -
Sed05g2587 267 MobiDBLite consensus disorder prediction 16 43 - -
Sed05g2587 267 Gene3D - 43 119 IPR036638 GO:0046983(InterPro)
Sed05g2587 267 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 42 264 IPR044278 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0009960(InterPro)
Sed05g2587 267 SMART finulus 58 106 IPR011598 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2587 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2028 Sed-Chr10:36828431 Sed05g2587 Sed-Chr5:37614620 1.00E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010769 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38635 PF00010 HLH 2.00E-10 No_clan Sed TF