Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2592 ATGGCTCAGGTTTCTCCTTCACCTCAAGTCGCCGGCACCGATCCAGCCGCCGTTGCAGGGGCTAACCAACATGCCACGACGTCGTTGTATGTTGGAGATCTCGACGTGAACGTCACTGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTCGTTTCGGTTAGGGTTTGCAGGGATTTGACCACTCGTCGATCGCTTGGTTATGGTTATGTCAATTTCAGCAACCCAGTTGATGCATCAAGGGCGTTGGATGTTCTAAACTTCACCCCTTTGAATGGGAATCCCATTAGAGTTATGCATTCTCATCGCGACCCTAGCGTGCGGAAAAGTGGTTCTGGGAATATTTTTATCAAGAACTTGGACAAGGCAATCGATCACAAAGCATTGCATGATACATTCTCTGCATTTGGTAACATTCTATCCTGCAAGGTTGCTACTGATGCATCTGGTCAGTCCAAAGGCTTTGGTTTTGTGCAATTTGACAGTGATGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTGAATGACAAACAGGTGTATGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAATAATGTTTTTGTTAAGAATCTGTCCGATTCTACATTGGAAGACGATTTGAAGAATATGTTTGAGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGACGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAGAATGCAGAAGATGCTGCTAGGTCCGTTGAAGAACTTAACGGAAAGAAGGTTGATGGGAAAGAGTGGTTTGTTGGAAAAGCCCAGAAGAAATCTGAAAGAGAAGTTGAATTGAAAAGTCGATTCGAGCAGAGTGTTAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACCTATATGTTAAGAATTTAGAAGATAGCATTGATGATGAAAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATGCAAGGTCATGCGAGACCCTAACGGATTGAGTAGGGGATCTGGTTTTGTTGCATTTTCAACTCCTGAAGAGGCTGCTAGAGCTCTTGGAGAGATGAATGGAAGAATGATCGTGAACAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCCAGGTTGCAGGCACAGTTTTCCCAAATGCAACCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGCTGGTCCAGGCATCGGACAACAAATATTTTATGGACAAGCTCCACCTACTCTTATTTCCTCACAGCCTGGCTTTGGTTACCAGCAGCAACTCATGCCTGGAATGAGGCCTGGCGGAGGTCCCATGCCAAATTTTTTCGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGCAGGCGTACAGGTGCCATTCAGCATAACCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGAGGGCGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTACCCATGCCTGGTGTTGCTGGAGGTATGTTCTCTGTTCCGTATGATATGGGAGGTATGCCACCACGGGATGCCGTCCACCCTCAACCAATTCCTGTTGGAGCTTTGGCTTCTGCCCTCGCAAATTCAACTCCAGAACAGCAAAGAACGATGTTGGGGGAAAATCTTTACCCACTTGTGGAACAGCTAGAGCCTGAGAATGCAGCAAAGGTTACAGGCATGCTACTGGAAATGGACCAAACTGAGGTTCTGCATTTGCTCGAGTCGCCTGAGGCTCTGAAAGCTAAGGTAGCTGAGGCGATCGAGGTTTTAAGAAGCGTCGCACAGCAGACAGGCAATGCAGCTGATCAATTGGCTTCACTATCTCTGAATGACAACCTAGATTCCTAA 1947 46.53 MAQVSPSPQVAGTDPAAVAGANQHATTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPVDASRALDVLNFTPLNGNPIRVMHSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDASGQSKGFGFVQFDSDEAALKAIEKLNGMLLNDKQVYVGPFLRKQERESVSEKTKFNNVFVKNLSDSTLEDDLKNMFEEFGPITSVVVMRDGEGKSKCFGFVNFENAEDAARSVEELNGKKVDGKEWFVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLEDSIDDEKLKELFSAFGTITSCKVMRDPNGLSRGSGFVAFSTPEEAARALGEMNGRMIVNKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPAGPGIGQQIFYGQAPPTLISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRTGAIQHNQQPVPMMQQQMLPRGGRVYRYPPGRGLPDLPMPGVAGGMFSVPYDMGGMPPRDAVHPQPIPVGALASALANSTPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAIEVLRSVAQQTGNAADQLASLSLNDNLDS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37650850 37654957 - Sed0018598.1 Sed05g2592 715218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2592 648 Gene3D - 116 188 IPR012677 -
Sed05g2592 648 CDD RRM3_I_PABPs 205 284 - -
Sed05g2592 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 PANTHER RNA BINDING PROTEIN 16 207 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Sed05g2592 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 CDD RRM1_I_PABPs 28 107 IPR034364 -
Sed05g2592 648 SMART rrm2_1 28 101 IPR003954 GO:0003676(InterPro)
Sed05g2592 648 SMART rrm2_1 207 279 IPR003954 GO:0003676(InterPro)
Sed05g2592 648 SMART rrm2_1 310 382 IPR003954 GO:0003676(InterPro)
Sed05g2592 648 SMART rrm2_1 116 188 IPR003954 GO:0003676(InterPro)
Sed05g2592 648 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 28 624 IPR006515 GO:0003723(InterPro)
Sed05g2592 648 Gene3D - 292 395 IPR012677 -
Sed05g2592 648 Gene3D - 190 291 IPR012677 -
Sed05g2592 648 FunFam Polyadenylate-binding protein 292 397 - -
Sed05g2592 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 FunFam Polyadenylate-binding protein 197 291 - -
Sed05g2592 648 SUPERFAMILY RNA-binding domain, RBD 206 389 IPR035979 GO:0003676(InterPro)
Sed05g2592 648 Gene3D - 546 630 - -
Sed05g2592 648 FunFam Polyadenylate-binding protein 113 196 - -
Sed05g2592 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 SUPERFAMILY PABC (PABP) domain 494 638 IPR036053 GO:0003723(InterPro)
Sed05g2592 648 SMART poly_2 563 626 IPR002004 GO:0003723(InterPro)
Sed05g2592 648 SMART rrm1_1 310 382 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 SMART rrm1_1 116 188 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 SMART rrm1_1 207 279 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 SMART rrm1_1 28 101 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676(InterPro)
Sed05g2592 648 FunFam Polyadenylate-binding protein 14 112 - -
Sed05g2592 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723(InterPro)
Sed05g2592 648 CDD RRM2_I_PABPs 113 189 IPR045305 -
Sed05g2592 648 CDD RRM4_I_PABPs 308 386 - -
Sed05g2592 648 Gene3D - 16 115 IPR012677 -
Sed05g2592 648 Pfam Poly-adenylate binding protein, unique domain 558 623 IPR002004 GO:0003723(InterPro)
Sed05g2592 648 FunFam Polyadenylate-binding protein 547 629 - -
Sed05g2592 648 Pfam RNA recognition motif 208 275 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 Pfam RNA recognition motif 29 99 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 Pfam RNA recognition motif 311 379 IPR000504 GO:0003723(InterPro)
Sed05g2592 648 Pfam RNA recognition motif 117 185 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1065 Sed-Chr2:48058218 Sed05g2592 Sed-Chr5:37650850 2.40E-30 dispersed
Sed05g2592 Sed-Chr5:37650850 Sed11g1386 Sed-Chr11:29852935 2.60E-186 dispersed
Sed10g2019 Sed-Chr10:36768905 Sed05g2592 Sed-Chr5:37650850 0.00E+00 wgd
Sed13g0482 Sed-Chr13:3303081 Sed05g2592 Sed-Chr5:37650850 2.20E-297 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2592 K13126 - csv:101223017 1141.72