Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2596 ATGGATCCAAAATCTACCGATTCACCAACACCACCTACTGTTAGCTCATTCGAAACTAAACATCCAGAAGTGAAGCCTCAGGCTCCTGCTACTTCTGGAATGGATAATGTGGCACGTGATGCACCATCTAAGCTATCTCCTACTGGCATAACTTCATGGTCTAAAAGCTTGAAAATTTCCCAACCACAGTCGACTTCACAAGATGACACTACTGAAAATGCTGGGAAGTCAGCTTTTGTGCGTTTTACTACCGGCTTGGGCTTGAATTTATCTCCCAAATCCGCTGCATCTAATGATTCCCCTGTTGGAACTACAAAAACTGCCCAACCTAGTTTTGTGGGATCAATTACTAGAGGCTTGGTTAACTCTTCAAAGAATGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGCTGTCTCACAAAATAAGCGAAGATACCAGGAAGGCGGCTTTGATCTGGATATGACTTATATTACTGAAAATATCATTGCTATGGGTTTCCCTGCAGGTGACATGAGCTCAGGGTTTTTTGGATACGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCTGAGAGGCTATATGATGCATCCTTATTTGAAGGAAAGGTGGCTTGCTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTTATAATATCATTTTGCCATAGTGCGTATTCATGGCTCAAGGATGATATTGAAAATGTTGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGCCTTGTTTTACCAAGTCAGATTAGATATGTCAAATATTTTGAGCGTAGTTTAACATACTTCAATGGAGAAAATCCTCCTGGCCGTAGGTGTGTGCTTAGAGGCTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCTACTAAAACACATCAAAGAACCAAGAGTCTTTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCACCTTGCCCGGGGAGCCTGGTCTGGCTGAGTTGTGTGGAGACTTCAAGGTTCAATTCCATGACCGCCAAGGAGATTTCTATTGTTGGTTAAACACAACCATGATTGAAAATCGGAAAATGCTGTACACTAATGATCTTGATGGGTTCGACAAGAGGAAACTGGCTTCCCCTGGATTTCAGGTGGAGGTTGTGCTAGTAGATACGTCACCCAATGTGGACAATACTAACAAGAAGTCGGATGAGAGCTCGGGTTTGAAACCTTCACGAGTTGATGGAAGTGAAGTTTACGAGAACCAAAACATAAAATCAGGAACTAACGATAGAGATGATGTATTTTCTGACGGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGGAGGCAGCTGCAGGTTCAGGGGCTGAAGGATCAGCTGTCAAGACGACATCTAAATCTCAAACTAGTGCAACTTCATCAGACGATATCACGAGTTTGTCACACGCAACAAAGCAAGTATCCCTAGGAGATGGTGGAGCTAAACAGACTGCTCCAGCCAGCAACCGAAAAAGCGATGGAGTCGGCAGATCTGATTCCCTCTCAGAAGTTCCAAGTTCAGAAAGTGAATTCAAGGCAATGGCAGCTGATGCTTCTGTTTTCACATTTGGTGACGATGAAGACTATGAAAGCGAGTAA 1836 42.81 MDPKSTDSPTPPTVSSFETKHPEVKPQAPATSGMDNVARDAPSKLSPTGITSWSKSLKISQPQSTSQDDTTENAGKSAFVRFTTGLGLNLSPKSAASNDSPVGTTKTAQPSFVGSITRGLVNSSKNAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCHSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERSLTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFTLPGEPGLAELCGDFKVQFHDRQGDFYCWLNTTMIENRKMLYTNDLDGFDKRKLASPGFQVEVVLVDTSPNVDNTNKKSDESSGLKPSRVDGSEVYENQNIKSGTNDRDDVFSDGESEGGSSKSKEAAAGSGAEGSAVKTTSKSQTSATSSDDITSLSHATKQVSLGDGGAKQTAPASNRKSDGVGRSDSLSEVPSSESEFKAMAADASVFTFGDDEDYESE 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37669456 37675785 + Sed0022035.2 Sed05g2596 715222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2596 611 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 225 278 - -
Sed05g2596 611 CDD PTP_PTEN 154 318 IPR045101 GO:0016791(InterPro)
Sed05g2596 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
Sed05g2596 611 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Sed05g2596 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311(InterPro)
Sed05g2596 611 MobiDBLite consensus disorder prediction 564 586 - -
Sed05g2596 611 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 129 326 - -
Sed05g2596 611 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Sed05g2596 611 SMART PTEN_C2_2 328 456 IPR014020 -
Sed05g2596 611 MobiDBLite consensus disorder prediction 1 74 - -
Sed05g2596 611 Pfam PTEN2, C2 domain 330 457 - -
Sed05g2596 611 Gene3D - 333 458 - -
Sed05g2596 611 MobiDBLite consensus disorder prediction 1 17 - -
Sed05g2596 611 MobiDBLite consensus disorder prediction 459 611 - -
Sed05g2596 611 MobiDBLite consensus disorder prediction 524 552 - -
Sed05g2596 611 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 346 454 IPR035892 -
Sed05g2596 611 MobiDBLite consensus disorder prediction 45 74 - -
Sed05g2596 611 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Sed05g2596 611 MobiDBLite consensus disorder prediction 492 510 - -
Sed05g2596 611 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 131 564 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed05g2596 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3520 Sed-Chr4:44650878 Sed05g2596 Sed-Chr5:37669456 4.70E-40 dispersed
Sed05g2596 Sed-Chr5:37669456 Sed05g2598 Sed-Chr5:37669456 0.00E+00 dispersed
Sed05g2595 Sed-Chr5:37669456 Sed05g2596 Sed-Chr5:37669456 0.00E+00 tandem
Sed05g2596 Sed-Chr5:37669456 Sed05g2597 Sed-Chr5:37669456 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2596 K01110 - csv:101222304 1061.6