Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2604 ATGGGTAGCTTTGAAGGAGAAAGAACAACAACAGGATTTGCAGCAAGAGACCCCTCTGGATTCCTCTCCCCATACACTTTCCAACTCAGAGAAACAGGGCCAGAGGATGTACACATAAGAGTCATATGTTGTGGGCTCTGCCACACAGACATCCACAACATAAAAAACGAGCTTGGAATGTCCAATTACCCCATGGTTCCAGGGCATGAAGTTGTGGGGGAAGTGGTTGAAATTGGGAAGAATGTGGAGAGATTTAAAGTGAAGGATTTGGTTGGAGTTGGATGCATTGTTGGGTCTTGCAAAAGCTGTGAACGATGTCAAACCGATAGAGAGCAGTATTGTAACAACAGGATTTGGACCAATAATGATGTTTATTCCGACGGCCGCCCAACCCAAGGCGGCTTTGCTACCGCTATGGTTGTCGACCAAAAATTTGTTGTGAAAGTACCAGAGGGTATGGCAGCGGAGCAGGCGTCGGCGCTGCTATGCGCCGGCGTGACGGTGTACAGCCCAATTAACCACTTCGGGCTCAAGAAAAGTGGGCTCAGAGGAGGGATCTTGGGCCTCGGTGGCGTCGGGCATATGGGAGTGAAGCTCGCAAAGGCATTGGGTCACCATGTCACAGTCATAAGCTCCTCCAACAGGAAGAGAGAAGAAGCATTGGACCATCTCGGTGCTGACCACTACCTCGTCAGCTCCGACGAGGCTCGCATGCAAGAGGCCGTCGACTCCCTCGATTATATCATCGACACCGTGCCGGTCCATCACCCTCTCGAGCCTTATCTCTCGCTTCTCAAGCTCGATGGCAAGTTGATCATGTTGGGCGTTGTTAATAACCCTCTGCAGTTCGTCTCTCCAATGGTCATTTTAGGAAGGAAGACGATCACGGGGAGCTTCATCGGGAGCATGAAGGAGACGGAAGAGATATTGGAGCTGTTCAAAGAGAAGGAACTGAGTTCAATGGTGGAAGTGGTGAAAATGGATTACATAAACAAAGCCATTGAAAGGTTGGAGAAGAATGATGTTAGATACAGGTTCGTTGTGGATGTTGAAGGAAGCAAGTTCTAA 1068 49.25 MGSFEGERTTTGFAARDPSGFLSPYTFQLRETGPEDVHIRVICCGLCHTDIHNIKNELGMSNYPMVPGHEVVGEVVEIGKNVERFKVKDLVGVGCIVGSCKSCERCQTDREQYCNNRIWTNNDVYSDGRPTQGGFATAMVVDQKFVVKVPEGMAAEQASALLCAGVTVYSPINHFGLKKSGLRGGILGLGGVGHMGVKLAKALGHHVTVISSSNRKREEALDHLGADHYLVSSDEARMQEAVDSLDYIIDTVPVHHPLEPYLSLLKLDGKLIMLGVVNNPLQFVSPMVILGRKTITGSFIGSMKETEEILELFKEKELSSMVEVVKMDYINKAIERLEKNDVRYRFVVDVEGSKF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37710278 37713206 - Sed0016235.1 Sed05g2604 715230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2604 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Sed05g2604 355 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Sed05g2604 355 Gene3D - 164 320 - -
Sed05g2604 355 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Sed05g2604 355 SUPERFAMILY GroES-like 16 181 IPR011032 -
Sed05g2604 355 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
Sed05g2604 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Sed05g2604 355 PANTHER ALDEHYDE REDUCTASE 9 351 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Sed05g2604 355 CDD CAD1 11 349 IPR047109 GO:0016616(InterPro)
Sed05g2604 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Sed05g2604 355 Pfam Alcohol dehydrogenase GroES-like domain 33 151 IPR013154 -
Sed05g2604 355 Gene3D - 13 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2604 Sed-Chr5:37710278 Sed10g0805 Sed-Chr10:5827449 5.90E-100 dispersed
Sed10g2013 Sed-Chr10:36715065 Sed05g2604 Sed-Chr5:37710278 5.50E-66 wgd
Sed13g0468 Sed-Chr13:3192509 Sed05g2604 Sed-Chr5:37710278 6.70E-168 wgd
Sed05g2604 Sed-Chr5:37710278 Sed07g1292 Sed-Chr7:9685535 5.10E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2604 K00083 - csv:101214622 606.675