Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2620 ATGGTGAGGTCGTCGTCGTGGTGGCTCCGGCCGGTGGAGCGGTGTTTGGGGCGGTGGTCCAGCGATGGGCTTGTGTGGCAGTCGGAATTGCAGCCTCATGCCTCCGGCGATTACTCCATCGCCGTGGCGCAGGCTAATTCTTGTCTCGAGGATCAGAGTCAGGTCTTTGCGTCTCCTTCTGCTACTTTTGTTGGTGTTTTTGATGGCCATGGCGGCCCTGAGGCTTCTCGCTTTGTTAATAGCCATCTTTTTCCTTATATGCACGAACAAGGTGGACTTTCGGAGGATGTTATTAAGAAGGCATTCAATGCTACAGAAGAGGAGTTTTTGCGTTTGGTGAAGCGGGATTTTCCTGCAAAGCCGCGCATTGCATCAGTTGGATCATGTTGTCTTGTAGGTGCAATTTCGAATAAGAAGTTATACGTTGCTAACCTCGGGGATTCGAGAGCTGTGCTCGGCTGCAAAGTTTCCGAGAGTCAGAAAACATCGGTTGTTGCTGAACGGTTGTCCACTGATCACAATGTTGGAGTAGATGAAGTTAGGAAGGAGGTTGTGGCACTTCATCCTGATGACTCCCATATTGTTGTCTATACCCGTGGAGTTTGGAGGATAAAAGGCATAATTCAGGTTTCAAGGTCTATAGGTGACGTCTTTTTAAAGAAACCCGAATTCAATCGGGACCCAATATTTCAACAATTCGGGAACCCTGTTCCGTTGAAGCGGCCAGTAATGACTGCAGAACCATCGATCCTGACACGAGAGCTTAAACCCCAAGACTTGTTCCTGATATTTGCATCTGATGGCCTCTGGGAACAACTGACTGATGAAGCTGCTGTGGACATAGTTTTCAAGAACCCAAGAGCTGGAATTGCAAAGAGATTAGTGAGTGCTGCCATCCACGAGGCGGCAAGGAAACGGGAGTTGAGATACTCCGACATAAAGAAGATCGAAAAGGGGGTTCGACGTCACTTCCACGACGATATCACTGTCATTGTCGTTTATCTTGACCATAACAGAAGCTCGCCTACCAGCCGAGCAAAGAGCGGCATTCCCGGGTACACTAGTGCACCTGTTGACATTTTCTCACTTAACTCAGACTATGAGGCAGAGGAAAAACTTCACTCAATGATCTGA 1134 48.41 MVRSSSWWLRPVERCLGRWSSDGLVWQSELQPHASGDYSIAVAQANSCLEDQSQVFASPSATFVGVFDGHGGPEASRFVNSHLFPYMHEQGGLSEDVIKKAFNATEEEFLRLVKRDFPAKPRIASVGSCCLVGAISNKKLYVANLGDSRAVLGCKVSESQKTSVVAERLSTDHNVGVDEVRKEVVALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVFLKKPEFNRDPIFQQFGNPVPLKRPVMTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVDIVFKNPRAGIAKRLVSAAIHEAARKRELRYSDIKKIEKGVRRHFHDDITVIVVYLDHNRSSPTSRAKSGIPGYTSAPVDIFSLNSDYEAEEKLHSMI 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37784969 37788001 - Sed0004033.1 Sed05g2620 715246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2620 377 Pfam Protein phosphatase 2C 57 304 IPR001932 -
Sed05g2620 377 CDD PP2Cc 42 335 IPR001932 -
Sed05g2620 377 Gene3D - 26 344 IPR036457 -
Sed05g2620 377 FunFam Probable protein phosphatase 2C 42 28 343 - -
Sed05g2620 377 PANTHER PROTEIN PHOSPHATASE 33 334 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g2620 377 SMART PP2C_4 27 333 IPR001932 -
Sed05g2620 377 ProSiteProfiles PPM-type phosphatase domain profile. 37 335 IPR001932 -
Sed05g2620 377 SUPERFAMILY PP2C-like 46 336 IPR036457 -
Sed05g2620 377 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2620 Sed-Chr5:37784969 Sed10g1968 Sed-Chr10:36360296 5.10E-142 dispersed
Sed10g1967 Sed-Chr10:36360296 Sed05g2620 Sed-Chr5:37784969 3.90E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2620 - - - 0.0