Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2626 | ATGGAGCAACTCACATGCCCCATTGAAGATGGAGATCATCAGTGGAGCTCTTTCAAATATGATGATGAAGAAGAAGCAACTTTCATGGCTCAGCTCTTCAATAACACAACCCTTGATCCCTTCATGGCTTCCCTTGATAATATTCATGAAGAATCTCCCCATGAAAGACCTTCTTCATCAAGCTTTTATAGGCTTTCACAAGAGAGTAGTGAGTTTAATGGTGGAAGTTATTGCAGCCAATTAGTATTTCCAACTCATCAAAATGATATTAATTATTGCAATCCCATGAACTTTTGCTTGGGAGGAGAGCTTGAAAACAATAACAATGGGGGTTTCATCCTTGAAAATGAGGACTCTATGAACTTAGAGATGAGTGAGGGTAATTTGCAGGCTTGTTTTGAAGCTCAATTGATAAAGTTACCTGAAGAAGAAGCTGCCATGGAAGAGGAGGGCCATAGCCAGCTTGAGATCAATTGCAAGAAAAGATCAAGGGGATTTGGAAATGTGCAAAAGGAAAGGAAGGAGAGGTCAAAGAAAACTCAAAAGGTTACCTCAAACACCAACACTGAAGAAGATGGCAATGCTGGCCATGGCAGGCAAAGCACAGGCAGCTATTTCTCAGAAGATGAATCCAACGACTCACTCGAGCTCAACGGAGAAACTAACATCTCGAGGTCGAAGCCGAAAGGTCCAACCAAATCCCATGCCAGCAGAGGCTCAGCTACAGATCCACAAAGCCTCTATGCAAGAAAAAGAAGAGAGAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTTCAACTCCAAATCAAGCTACTAAGCTCTGATGATTTATGGATGTATGCTCCGATCGCTTACAACGGAATGGACGTTGGGCTTAATCCGGCCCCAAACACGCTAAAGGAATCATGA | 981 | 42.0 | MEQLTCPIEDGDHQWSSFKYDDEEEATFMAQLFNNTTLDPFMASLDNIHEESPHERPSSSSFYRLSQESSEFNGGSYCSQLVFPTHQNDINYCNPMNFCLGGELENNNNGGFILENEDSMNLEMSEGNLQACFEAQLIKLPEEEAAMEEEGHSQLEINCKKRSRGFGNVQKERKERSKKTQKVTSNTNTEEDGNAGHGRQSTGSYFSEDESNDSLELNGETNISRSKPKGPTKSHASRGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDVGLNPAPNTLKES | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 37878677 | 37880432 | + | Sed0012203.1 | Sed05g2626 | 715252 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2626 | 326 | SMART | finulus | 246 | 295 | IPR011598 | GO:0046983(InterPro) | |
Sed05g2626 | 326 | MobiDBLite | consensus disorder prediction | 146 | 181 | - | - | |
Sed05g2626 | 326 | MobiDBLite | consensus disorder prediction | 182 | 244 | - | - | |
Sed05g2626 | 326 | Pfam | Helix-loop-helix DNA-binding domain | 250 | 290 | IPR011598 | GO:0046983(InterPro) | |
Sed05g2626 | 326 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 240 | 306 | IPR036638 | GO:0046983(InterPro) | |
Sed05g2626 | 326 | Gene3D | - | 242 | 298 | IPR036638 | GO:0046983(InterPro) | |
Sed05g2626 | 326 | CDD | bHLH_AtIND_like | 241 | 303 | - | - | |
Sed05g2626 | 326 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 240 | 289 | IPR011598 | GO:0046983(InterPro) | |
Sed05g2626 | 326 | MobiDBLite | consensus disorder prediction | 146 | 250 | - | - | |
Sed05g2626 | 326 | FunFam | Basic helix-loop-helix transcription factor | 241 | 298 | - | - | |
Sed05g2626 | 326 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 60 | 309 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2626 | Sed-Chr5:37878677 | Sed13g1799 | Sed-Chr13:23005146 | 8.50E-37 | dispersed | |
Sed13g0445 | Sed-Chr13:3024975 | Sed05g2626 | Sed-Chr5:37878677 | 1.70E-45 | wgd | |
Sed05g2626 | Sed-Chr5:37878677 | Sed07g1264 | Sed-Chr7:9507937 | 1.20E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38638 | PF00010 | HLH | 4.50E-09 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2626 | - | - | - | 0.0 |