Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2626 ATGGAGCAACTCACATGCCCCATTGAAGATGGAGATCATCAGTGGAGCTCTTTCAAATATGATGATGAAGAAGAAGCAACTTTCATGGCTCAGCTCTTCAATAACACAACCCTTGATCCCTTCATGGCTTCCCTTGATAATATTCATGAAGAATCTCCCCATGAAAGACCTTCTTCATCAAGCTTTTATAGGCTTTCACAAGAGAGTAGTGAGTTTAATGGTGGAAGTTATTGCAGCCAATTAGTATTTCCAACTCATCAAAATGATATTAATTATTGCAATCCCATGAACTTTTGCTTGGGAGGAGAGCTTGAAAACAATAACAATGGGGGTTTCATCCTTGAAAATGAGGACTCTATGAACTTAGAGATGAGTGAGGGTAATTTGCAGGCTTGTTTTGAAGCTCAATTGATAAAGTTACCTGAAGAAGAAGCTGCCATGGAAGAGGAGGGCCATAGCCAGCTTGAGATCAATTGCAAGAAAAGATCAAGGGGATTTGGAAATGTGCAAAAGGAAAGGAAGGAGAGGTCAAAGAAAACTCAAAAGGTTACCTCAAACACCAACACTGAAGAAGATGGCAATGCTGGCCATGGCAGGCAAAGCACAGGCAGCTATTTCTCAGAAGATGAATCCAACGACTCACTCGAGCTCAACGGAGAAACTAACATCTCGAGGTCGAAGCCGAAAGGTCCAACCAAATCCCATGCCAGCAGAGGCTCAGCTACAGATCCACAAAGCCTCTATGCAAGAAAAAGAAGAGAGAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTTCAACTCCAAATCAAGCTACTAAGCTCTGATGATTTATGGATGTATGCTCCGATCGCTTACAACGGAATGGACGTTGGGCTTAATCCGGCCCCAAACACGCTAAAGGAATCATGA 981 42.0 MEQLTCPIEDGDHQWSSFKYDDEEEATFMAQLFNNTTLDPFMASLDNIHEESPHERPSSSSFYRLSQESSEFNGGSYCSQLVFPTHQNDINYCNPMNFCLGGELENNNNGGFILENEDSMNLEMSEGNLQACFEAQLIKLPEEEAAMEEEGHSQLEINCKKRSRGFGNVQKERKERSKKTQKVTSNTNTEEDGNAGHGRQSTGSYFSEDESNDSLELNGETNISRSKPKGPTKSHASRGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDVGLNPAPNTLKES 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37878677 37880432 + Sed0012203.1 Sed05g2626 715252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2626 326 SMART finulus 246 295 IPR011598 GO:0046983(InterPro)
Sed05g2626 326 MobiDBLite consensus disorder prediction 146 181 - -
Sed05g2626 326 MobiDBLite consensus disorder prediction 182 244 - -
Sed05g2626 326 Pfam Helix-loop-helix DNA-binding domain 250 290 IPR011598 GO:0046983(InterPro)
Sed05g2626 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 306 IPR036638 GO:0046983(InterPro)
Sed05g2626 326 Gene3D - 242 298 IPR036638 GO:0046983(InterPro)
Sed05g2626 326 CDD bHLH_AtIND_like 241 303 - -
Sed05g2626 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983(InterPro)
Sed05g2626 326 MobiDBLite consensus disorder prediction 146 250 - -
Sed05g2626 326 FunFam Basic helix-loop-helix transcription factor 241 298 - -
Sed05g2626 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 309 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2626 Sed-Chr5:37878677 Sed13g1799 Sed-Chr13:23005146 8.50E-37 dispersed
Sed13g0445 Sed-Chr13:3024975 Sed05g2626 Sed-Chr5:37878677 1.70E-45 wgd
Sed05g2626 Sed-Chr5:37878677 Sed07g1264 Sed-Chr7:9507937 1.20E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38638 PF00010 HLH 4.50E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2626 - - - 0.0