Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2663 | ATGCGGATGAGTTGTAATGGCTGCAGAGTTCTGCGCAAAGGCTGCAGCGAAAACTGCAGTATTCGACCCTGCTTGCAATGGATCAAAACCTCTGAATCTCAGGCCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGACTCATGAACCTCATCAACGCCGGCCCCGACCATCTCCGCCCTGCCATTTTCCGATCTCTTCTCTATGAGGCCTGTGGACGGATTGTCAACCCCATCTACGGTTCGGTTGGCTTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGCCGCCGTCGAGGCCGTCCTCAAAGGCGCTCCGATCACGCCTATTAACTCCGAGGCGGCCGCCACCGGCGATGGCCCGCCGTTGAAGGCCTACGACATCCGCCACGTTTCCAAGGATGAAAACTCCGCCGCTTCCACCCGCCCTGTCAAGACTCGCTGCCGGTTCAAGCGCTCTGCCAAACCCAGTCGAGGAATCGCATCCCCCGAGTTCAACCGGTCCTCCAGCGGCGACTCGTCGCTGAGTCACCAGTCCGACTCGCCGCATCTCGAGCACCAGAGCAAGGAATCCCAGAGCATGATCTCCGGCGAAGCGGCGGTAGTATCTCCGCCGCCGCCGCCGGTTCTGATGGCGGATAAGGAATTGGGGTTAGAACTAACCCTGGGGATGGAACCGGTGTCACGTGCACAGCAGCACGTGATACCAATGAAGAAGCGGAAGATAGAGGCCCGGCCCAACAAGGAAGCGTGCAATACGGTTCTGGGCCTGGATTTTTCAGCCTGA | 792 | 59.85 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASTRPVKTRCRFKRSAKPSRGIASPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPPVLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEARPNKEACNTVLGLDFSA | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 38101877 | 38103400 | + | Sed0012384.1 | Sed05g2663 | 715289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2663 | 263 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 228 | - | GO:0010468(PANTHER) | |
Sed05g2663 | 263 | MobiDBLite | consensus disorder prediction | 164 | 183 | - | - | |
Sed05g2663 | 263 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - | |
Sed05g2663 | 263 | PIRSF | AS2 | 149 | 262 | IPR017414 | - | |
Sed05g2663 | 263 | PIRSF | AS2 | 1 | 160 | IPR017414 | - | |
Sed05g2663 | 263 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Sed05g2663 | 263 | MobiDBLite | consensus disorder prediction | 136 | 208 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2663 | Sed-Chr5:38101877 | Sed07g2092 | Sed-Chr7:36329658 | 4.90E-51 | dispersed | |
Sed05g2663 | Sed-Chr5:38101877 | Sed12g2071 | Sed-Chr12:31483170 | 5.10E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38640 | PF03195 | LOB | 3.30E-24 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2663 | - | - | - | 0.0 |