Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2663 ATGCGGATGAGTTGTAATGGCTGCAGAGTTCTGCGCAAAGGCTGCAGCGAAAACTGCAGTATTCGACCCTGCTTGCAATGGATCAAAACCTCTGAATCTCAGGCCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGACTCATGAACCTCATCAACGCCGGCCCCGACCATCTCCGCCCTGCCATTTTCCGATCTCTTCTCTATGAGGCCTGTGGACGGATTGTCAACCCCATCTACGGTTCGGTTGGCTTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGCCGCCGTCGAGGCCGTCCTCAAAGGCGCTCCGATCACGCCTATTAACTCCGAGGCGGCCGCCACCGGCGATGGCCCGCCGTTGAAGGCCTACGACATCCGCCACGTTTCCAAGGATGAAAACTCCGCCGCTTCCACCCGCCCTGTCAAGACTCGCTGCCGGTTCAAGCGCTCTGCCAAACCCAGTCGAGGAATCGCATCCCCCGAGTTCAACCGGTCCTCCAGCGGCGACTCGTCGCTGAGTCACCAGTCCGACTCGCCGCATCTCGAGCACCAGAGCAAGGAATCCCAGAGCATGATCTCCGGCGAAGCGGCGGTAGTATCTCCGCCGCCGCCGCCGGTTCTGATGGCGGATAAGGAATTGGGGTTAGAACTAACCCTGGGGATGGAACCGGTGTCACGTGCACAGCAGCACGTGATACCAATGAAGAAGCGGAAGATAGAGGCCCGGCCCAACAAGGAAGCGTGCAATACGGTTCTGGGCCTGGATTTTTCAGCCTGA 792 59.85 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASTRPVKTRCRFKRSAKPSRGIASPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPPVLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEARPNKEACNTVLGLDFSA 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38101877 38103400 + Sed0012384.1 Sed05g2663 715289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2663 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 228 - GO:0010468(PANTHER)
Sed05g2663 263 MobiDBLite consensus disorder prediction 164 183 - -
Sed05g2663 263 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Sed05g2663 263 PIRSF AS2 149 262 IPR017414 -
Sed05g2663 263 PIRSF AS2 1 160 IPR017414 -
Sed05g2663 263 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Sed05g2663 263 MobiDBLite consensus disorder prediction 136 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2663 Sed-Chr5:38101877 Sed07g2092 Sed-Chr7:36329658 4.90E-51 dispersed
Sed05g2663 Sed-Chr5:38101877 Sed12g2071 Sed-Chr12:31483170 5.10E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38640 PF03195 LOB 3.30E-24 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2663 - - - 0.0