Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2673 ATGGTTCAGGCGACAAATCCGTCCAAACTGCGATGGGGGGAGCTAGACGACGACGATGGCGATCTCGATTTTCTCCTTCCGCCCAAGCAAGTTATCGGGCCTGACGAAAATGGCTTGAAGAAAACGATCGAGTATCAGTTTAACGAAGATGGCAACAAGGTCAAAATCACGACCACCTCTCGAACTCGCAAGCTTGCCAATGCTCGTCTGAGTAAACATGCCGTCGAGCGCCGATCTTGGCCCAAGTTCGGGGATGCTGTACATGAAGAAGTCGGCAGTAGACTCACTATGGTCTCCACTGAGGAGATTCTTCTTGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGATGAACCTAAGGTTGCTGGAGACCCTCTAGCTCAACTTGGAAAAGGAGGAGCTGTTCTCATGGTCTGTCGAACTTGTGGTAAGAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCTGATGTAGTGGATAAGGCTGTTGCACCTGAGGCTGCAGCTGCTGCTCCTGGTGCAACTAAGGGAGCATATGTTCCTCCTGGTATGAGACCTGGGGCAGAGAGGACTGGAACCGACATGAGACGTAGGAATGATGAAAACTCTGTTCGTGTCACCAACCTTTCGGAGGACACTAGAGAGCCCGACTTGCATGAGCTTTTCCGACCATTTGGTTCTGTTAGCCGAGTTTATGTGGCTATTGATCAGAAGACCAACATGAGCAGAGGATTTGGTTTTGTCAACTTTGTGAACCGCGAGGATGCACAAAGATCAATTAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGACTTAA 867 50.06 MVQATNPSKLRWGELDDDDGDLDFLLPPKQVIGPDENGLKKTIEYQFNEDGNKVKITTTSRTRKLANARLSKHAVERRSWPKFGDAVHEEVGSRLTMVSTEEILLERPRAPGSKPDEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADVVDKAVAPEAAAAAPGATKGAYVPPGMRPGAERTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGSVSRVYVAIDQKTNMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38150187 38152135 + Sed0012319.1 Sed05g2673 715299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2673 288 CDD eIF3G 37 156 IPR024675 -
Sed05g2673 288 Gene3D - 174 288 IPR012677 -
Sed05g2673 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Sed05g2673 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed05g2673 288 Pfam Eukaryotic translation initiation factor 3 subunit G 30 157 IPR024675 -
Sed05g2673 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Sed05g2673 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Sed05g2673 288 MobiDBLite consensus disorder prediction 179 206 - -
Sed05g2673 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Sed05g2673 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 42 283 - -
Sed05g2673 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed05g2673 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Sed05g2673 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2408 Sed-Chr5:36481491 Sed05g2673 Sed-Chr5:38150187 1.80E-07 transposed
Sed08g2028 Sed-Chr8:34575973 Sed05g2673 Sed-Chr5:38150187 8.70E-150 transposed
Sed05g2673 Sed-Chr5:38150187 Sed06g1404 Sed-Chr6:38608143 1.50E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2673 K03248 - csv:101207022 522.316