Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2687 ATGAAACGAGACCACTCTCACCAATCCCCGAATCCCACCGCCGGCAAGGCCAAGCTATGGCCGGACCAACAGGAAGACGACGACGAGCTTCTCGCCGCTCTCGGCTACAACGTCCGTTCCGCGGACCTGGCCGACATCGCCCTGCAAATCGAGCTTCTCGACATGAAAATGGGTTTGTCCGAAGAGGACGGGATTTCTCATCTCTCTTCGAACACCGTTCATTACAATCCCTCCGATGTTTCCTCTTGGGTTCAGAGCATGCTCGCCGAACTCAACGGCCCCCTTCAATCCCAACAAATCCACGATCCCATTCTCGCTTTGGCCGAATCCACTTCTTCTTCCTCCGTCGCCCCTGCGCCCGCCTTCGTCGACGATTCCGAGTACGATCTCAGAGCGATTCCCGGCGTTGCGGCCCTCCCCCAACCCGATTCCACCAACCCCAGAAAGCGATTTAAGAAATCCGACTCCGAATCGGTTGTTACTGGCTCTGTTTCGTCTTCTTCGTCCTCGCCGGAGCAGTCGCGCACGGTGGTTCTCGTCGATTCCGCCGACACCGGCGTCCGTCTGGTTCACAGCCTCCTCGCCTGCGTCGACGCCGTCGACACCAACAACCTCAACCTCGCCGACGCGCTGCTGAAACACATCAGAATCCTCATCGAGGCACAGGCCGGCGTTATGAGGAAAGTCGCCGGATATTTCGCTCAAGCCCTCACTCGCCGGATCTACCGATTCCACCCACAGAAGCCCTTCGATGATTCATCTTCCTACACCGATCTTCTCCAAATGCATTTCTACGAATCTTGTCCGTATCTGAAATTCGCCCATTTCACCGCCAATCAAGCCATTCTCGAATCTGTCGGCTCCGCAGCAACGCTCCACGTTGTCGATTTCAACCTCCAGCAAGGCCTCCAATGGCCGGCGTTGATCCAAGCCCTCGCGCTCCGTCCGGGAGGTCCGCCGGTGTTTCATCTCACCGGAATCGCCCCACCGCCGGCAGAAAGTTCCACCGACGGATTACAAGAAGTGGGTTCAAAATTAGCCCAATTCGCAGACATGATGGGAGTAAAATTCGAATTCCGTGGCTACTTCTGCGACAGTTTAGCCGATCTAGAACCATCCATACTCTATTTAGAATCGGAAACCGTGGCCATAAACTCAATCTTCGAGCTCCACCGACTCCTGGCGCATCCGGGAGCGATCGAGAAAGTTCTAACCACAATCAAAGAACTCAACCCGAAAATCGTCACCGTCGTGGAGCAGGTGGCCGATCTGAACGGACCTTCATTCACGGAACGGTTCACGGAAGCGTTGCATTATTACTCGAGCTTGTTCGATTCGCTGGAAGGGTCGGCGGCGGGGGAGGAGGACGTGGCGAGGTCGGAGGAGTATTTGGGGCGGCAGATCTGGAACGTGGTGGCGTGTGAAGGCTCGGACCGGGTCGAGCGGCACGAGACGGTGGCGCAGTGGCGGAACCGGATGGGTTCCAGCGGGTTCGAGATGGTTCATCTGGGTTCGAACGCGTTCAAGCAGGCCAGCACTTTACTGGCTCTGTGCGGCGACGGAAATGGGTACAGAGTTGAAGAGAACGGTGGGAGTTTGACGCTCGGTTGGCATACCCGGCCGCTCATCGCCACCTCCGCCTGGGCCGTGGCCGAGTCGAAGTGA 1665 57.24 MKRDHSHQSPNPTAGKAKLWPDQQEDDDELLAALGYNVRSADLADIALQIELLDMKMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNGPLQSQQIHDPILALAESTSSSSVAPAPAFVDDSEYDLRAIPGVAALPQPDSTNPRKRFKKSDSESVVTGSVSSSSSSPEQSRTVVLVDSADTGVRLVHSLLACVDAVDTNNLNLADALLKHIRILIEAQAGVMRKVAGYFAQALTRRIYRFHPQKPFDDSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGSAATLHVVDFNLQQGLQWPALIQALALRPGGPPVFHLTGIAPPPAESSTDGLQEVGSKLAQFADMMGVKFEFRGYFCDSLADLEPSILYLESETVAINSIFELHRLLAHPGAIEKVLTTIKELNPKIVTVVEQVADLNGPSFTERFTEALHYYSSLFDSLEGSAAGEEDVARSEEYLGRQIWNVVACEGSDRVERHETVAQWRNRMGSSGFEMVHLGSNAFKQASTLLALCGDGNGYRVEENGGSLTLGWHTRPLIATSAWAVAESK 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38266944 38269385 - Sed0019014.1 Sed05g2687 715313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2687 554 SMART DELLA_2 28 101 - -
Sed05g2687 554 Pfam GRAS domain family 189 548 IPR005202 -
Sed05g2687 554 MobiDBLite consensus disorder prediction 135 175 - -
Sed05g2687 554 Gene3D - 27 91 IPR038088 -
Sed05g2687 554 MobiDBLite consensus disorder prediction 157 175 - -
Sed05g2687 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 166 548 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Sed05g2687 554 ProSiteProfiles GRAS family profile. 180 549 IPR005202 -
Sed05g2687 554 Pfam Transcriptional regulator DELLA protein N terminal 28 93 IPR021914 -
Sed05g2687 554 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1115 Sed-Chr3:6875616 Sed05g2687 Sed-Chr5:38266944 4.20E-161 dispersed
Sed05g2687 Sed-Chr5:38266944 Sed08g0736 Sed-Chr8:5415102 2.80E-112 dispersed
Sed05g2687 Sed-Chr5:38266944 Sed01g0551 Sed-Chr1:4124622 1.10E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38643 PF03514 GRAS 1.50E-121 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2687 K14494 - csv:101203095 842.417