Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2696 ATGGTGTTCTCCCATGCCTTTCCGGCGGGTTTTTTCACGGCGGCGGTTCTGGGTTTGGCTCTTTTGGGCTCTGTTCGGCCGGATCTGGCCGCCGACAGGGCGGCGCTGGTGGGTTTCCGCGCGGCGATGGGTGGCCGCCCCAGATTGGAGTGGAATCTCTCCGATCAATCTCCCTGTTCTTGGGCTGGTGTTACCTGTGATCGAAATGGGGTTTTTGAGCTTCGGCTTCCGGCTATGGGGCTTTCCGGCGATCTCCCGGTGGGGCTTGGGAATTTGACTCAGTTACAAACTCTGTCTCTGAGGTTTAATGCTCTCTCCGGTCCGATTCCGGCTGATTTTGCGAATCTTCGTGGGTTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTCCGGCGAGATTCCGGCGTTTCTGTTCGGTTTGAAGAACTTGGTTCGGTTGAACATGGCGGACAACAACTTTTCAGGTGAGATTCCATCTGGGTTCAATACTCTGTCCCGTTTGGCTACTCTGTATTTACAAAACAATCAGTTTACTGGAGCTGTTCCTGATTTGAATATCTCTCTTGCCCAATTTAACGTATCGTTTAATCAATTGAATGGTTCGATTCCTCCGAATCTCTCTGGTTTCCCGGCGAGTGTTTTTGAGGGGAATTCGCTCTGTGGGGCGCCATTGTTGCTCTGTAACACGACCGCCCTCGAGCCCGGTCGAAAGTCGAAGCTCTCGGCCGGAGCAATAGCTGGAATTGTGATTGGTGGTTTGTTTTTGTTGGTGTTGATTGTGGTTGTTCTGATTCTTGTGTGTCAAAGGAAGAGTAAGGGGAAGTCGAAAGCGGGGGCTGGGCCGGGTGGTAGGGAGGTTGAGGCGTCGAGGGAGAAGGCGTCGACGGCAGGAAGTAGCGAAAGCATAAGCATAGATCATTTGACTGCACCTAGGTCGACTACGGGGAAGGGCGGGGAGAAGGATAAGAGATTGGTGTTCTTTGGGAATGTGGGCAATGTGTTTGATTTGGAGGATTTGTTGAGATCTTCTGCAGAGGTTCTTGGGAAGGGGACGTTCGGGACGGCTTATAAGGCGACACTGGAGACGGGGACGGTCGTCGCCGTGAAACGGTTGAAGGAGATGACAGCAGTGGAGAAGGATTTCAGAGAGAAGATGGAGGAGGTGGGGAAGATGAAACATGAGAACTTGATGCCTCTTAGAGCTTACTATTACACTAGAGAGGAAAAGCTTTTGGTTCATGATTACATGCCAATGGGAAGCTTGTCTGCCCTTTTACATGGTAATAAAGAGTCAGGAAGAAGTCCATTGAATTGGGAAGCAAGGTCAGGCATCGCACTCGGAGTCGCTCGTGGGATTCATTACCTTCACTCTCAAGGCCCCACCATCTCTCATGGCAACATCAAGTCGTCAAATGTTCTCCTCACTCGATCATATGAAGCTTGCGTATCTGACTTCGGCCTCGCACAACTAGCAATTTCACCCTCAGGCCCAAGTCGTGTAGCTGGTTATCGAGCACCAGAGGTCACTGATACTCGAAAGGTGTCACAAAAGGCCGACGTATATAGCTTCGGAGTGTTGTTACTGGAGGTGCTAACAGGGAAAGCTCCTACACATTCTATCTTGAATGAGGAAGGTGTAGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCGGAAGTATTTGATGAAGAGCTTCTTAGGTACCAAAATGTTGAGGAGGAAATGGTTCAACTCTTGGAACTTGCGTTACAATGCACAATCCGATATCCCGATAATCGTCCTGGAATGGAGGAGATCGTTCGACGTATCGAAGAGCTATGTCGATCGACCTCACAAAAACAGAGCGAGACAATCAACAATGGAAACAGTGGTGTTTCTACACAGTTGCATTCAATAAGTTCAGATGATATACCATCAACATGA 1935 49.56 MVFSHAFPAGFFTAAVLGLALLGSVRPDLAADRAALVGFRAAMGGRPRLEWNLSDQSPCSWAGVTCDRNGVFELRLPAMGLSGDLPVGLGNLTQLQTLSLRFNALSGPIPADFANLRGLRNLYLQGNLFSGEIPAFLFGLKNLVRLNMADNNFSGEIPSGFNTLSRLATLYLQNNQFTGAVPDLNISLAQFNVSFNQLNGSIPPNLSGFPASVFEGNSLCGAPLLLCNTTALEPGRKSKLSAGAIAGIVIGGLFLLVLIVVVLILVCQRKSKGKSKAGAGPGGREVEASREKASTAGSSESISIDHLTAPRSTTGKGGEKDKRLVFFGNVGNVFDLEDLLRSSAEVLGKGTFGTAYKATLETGTVVAVKRLKEMTAVEKDFREKMEEVGKMKHENLMPLRAYYYTREEKLLVHDYMPMGSLSALLHGNKESGRSPLNWEARSGIALGVARGIHYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAISPSGPSRVAGYRAPEVTDTRKVSQKADVYSFGVLLLEVLTGKAPTHSILNEEGVDLPRWVQSVVQEEWTAEVFDEELLRYQNVEEEMVQLLELALQCTIRYPDNRPGMEEIVRRIEELCRSTSQKQSETINNGNSGVSTQLHSISSDDIPST 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38355047 38357784 - Sed0019518.1 Sed05g2696 715322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2696 644 Gene3D Ribonuclease Inhibitor 29 233 IPR032675 -
Sed05g2696 644 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Sed05g2696 644 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Sed05g2696 644 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Sed05g2696 644 Pfam Leucine Rich Repeat 119 140 IPR001611 GO:0005515(InterPro)
Sed05g2696 644 Gene3D Transferase(Phosphotransferase) domain 1 416 635 - -
Sed05g2696 644 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Sed05g2696 644 SUPERFAMILY L domain-like 50 209 - -
Sed05g2696 644 MobiDBLite consensus disorder prediction 616 644 - -
Sed05g2696 644 FunFam Probable inactive receptor kinase RLK902 29 185 - -
Sed05g2696 644 MobiDBLite consensus disorder prediction 273 317 - -
Sed05g2696 644 FunFam Probable inactive receptor kinase At1g48480 416 618 - -
Sed05g2696 644 ProSiteProfiles Protein kinase domain profile. 341 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2696 644 CDD STKc_IRAK 347 610 - -
Sed05g2696 644 FunFam pollen receptor-like kinase 1 311 415 - -
Sed05g2696 644 SUPERFAMILY Protein kinase-like (PK-like) 344 607 IPR011009 -
Sed05g2696 644 Pfam Protein tyrosine and serine/threonine kinase 345 606 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2696 644 Gene3D Phosphorylase Kinase; domain 1 327 415 - -
Sed05g2696 644 PANTHER OS05G0588300 PROTEIN 15 616 IPR050994 -
Sed05g2696 644 MobiDBLite consensus disorder prediction 292 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2696 Sed-Chr5:38355047 Sed08g2770 Sed-Chr8:39295344 2.70E-159 dispersed
Sed05g2696 Sed-Chr5:38355047 Sed01g1779 Sed-Chr1:13018392 1.50E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79238 PF00069 Pkinase 9.40E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2696 - - - 0.0