Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2700 ATGATCCTGTCATGGAGGAAAACCAAACTAGGGTTTCTCCCCAAATTGAACAAAAACCTTCCGGCCCTCGATTCAGGTTCGGAAATGCTGATCCCTTCGCATTATTTATGTCCCATTTCTCTCGATTTGATGAAAGACCCTGTGATTCTGTCCACTGGGATTTCTTACGATCGAGAGAGCATCGAGAGGTGGATTGAGGGGGGCAATTTTTCTTGCCCTGTTACGAACCAGGGTTTGACGAGTTTTGACCTAATCCCCAATCATGCATTGAGGAAGATGATCCAGGATTGGTGCGTCGCCAATCGGTCTTACGGGTTCGAGCGGATTCCCACTCCGAGGATCCCGGTAACGCCGTATGAGGTTAACGACGTTTCGTCGCGAATCGCCGTTGCGATTCAGCGGGGCGATTCGAAGAGGTGTGGTGAATTGGTGAGTAAGATTAGGAATTGGGCCAGAGAGAGTGAGAGGAATAGAAGGTGTATTGTGAATGGAGGAGCTGGGAATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCCATTGAGAAACATGTGGGGTTGTTGGAGGAGATTTTGTTGGTTTTGGTGTTGATGTTCCCAATTTCCAATGAAGGGTTATCCAAGCTTGGATCTACGGATTCGTTGAGGTGCTTGGTTTCCTTCTTGTTAGGGAAAGATCTATCTCCAAAACAGAATGCAGTTTTTGTTCTGAAAGAATTGCTTTCGATTGATCAAAGATATGTCGATTCATTGGCCGCGATTGAAGGAGTATCCGAAGCTGTAGTTAGCATCATTAAGGAGCCTCTTTGCTCCTCTGCCACAAAATCATCGCTTACAGCCATGTTCTACATGATTTTACCATCAGAAACCTGTGAGAAAACGGCGCTGAAATTTGTTGAGCTGGGGTTGGTCTCTCAGCTGCTAGATTTTATGGTAGATGCGGAGAAAAGTCTATGCGAGAAAGCTTTGGGAGTCTTGGATGGAATCTGCGATTTCGAACAAGGAAGAGAGAAACTTTACGAAAATGCGCTAACCATTCCACTCTTGGTTAAGAAGATCCTAAGAGTTTCAGAGACGGCCACTGAGTTTTCTCTGTCAATATTGTTGAAGCTTTGTAAGAGTGGAGAAAAGGGTCAGGAAGAGGTGAGGGTGGAAGCTGCTCAACTTGGTGCTTTTCAGAAGATATTGGTTCTTTTACAGGTTGGTTGTGGTGGTGACTTGAAAGCTAAGGTCACTGAGATGTTGAAATTGTTGAATCTGTACAAAGATAGGTTGGATTGTATTGATTCATCCATGCATTTTAGGTACTTGAAGAAATCATTCTGA 1329 44.47 MILSWRKTKLGFLPKLNKNLPALDSGSEMLIPSHYLCPISLDLMKDPVILSTGISYDRESIERWIEGGNFSCPVTNQGLTSFDLIPNHALRKMIQDWCVANRSYGFERIPTPRIPVTPYEVNDVSSRIAVAIQRGDSKRCGELVSKIRNWARESERNRRCIVNGGAGNVLAASFEHFAGVSIEKHVGLLEEILLVLVLMFPISNEGLSKLGSTDSLRCLVSFLLGKDLSPKQNAVFVLKELLSIDQRYVDSLAAIEGVSEAVVSIIKEPLCSSATKSSLTAMFYMILPSETCEKTALKFVELGLVSQLLDFMVDAEKSLCEKALGVLDGICDFEQGREKLYENALTIPLLVKKILRVSETATEFSLSILLKLCKSGEKGQEEVRVEAAQLGAFQKILVLLQVGCGGDLKAKVTEMLKLLNLYKDRLDCIDSSMHFRYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38426075 38427720 - Sed0015042.1 Sed05g2700 715326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2700 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g2700 442 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Sed05g2700 442 SUPERFAMILY ARM repeat 185 378 IPR016024 -
Sed05g2700 442 Gene3D - 126 418 IPR011989 -
Sed05g2700 442 SUPERFAMILY RING/U-box 30 107 - -
Sed05g2700 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 107 IPR013083 -
Sed05g2700 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Sed05g2700 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Sed05g2700 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g2700 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2700 Sed-Chr5:38426075 Sed13g0489 Sed-Chr13:3337258 1.00E-53 dispersed
Sed05g2700 Sed-Chr5:38426075 Sed06g1382 Sed-Chr6:38227515 1.60E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2700 - - - 0.0