Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2729 ATGGATTTTATGGTCGAGGGTGGTGGGGGTAATGGTGGTGGGTCTGGTGATGAACATGAGGTTTCTGATGATCGTAAGGGGAAGAAGGTTTACCATCGCCATACTCCTTTTCAGATTCAGCACCTTGAATCATTTTTCAGGGATTGCCCCCACCCTGATGAAAATCAGCGGCGTCAGCTGAGTCGAGAGCTTGGCCTGGAGACCAAACAGATAAAATTCTGGTTTCAAAACAAGAGAACTCAAACAAAGGCTCAGAATGAGCGAGCAGATAACTCTACTCTTCGGTCAGAGAATGAAAAGATTCAATGTGAAAATCTTGCAATTAGGGAAGCGTTGAGGAATGTAATCTGTCCCTCCTGTGGAGGTCCACCTTTTGGAGAAGAAGAACGGCAGCGCAATCTCCAAAAACTGCGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGAAAAAGTTTCCAACCTTCTCGCCAAGTACATTGGAAAACCAATATCACAGCTTGAATCATTATTGCCTGTTCTTGGATCTTCACTCGATATGCCACCCAGAAGTTCCCTTAACCCAATAGTTGCAAATCCTGCAATCGATCTTATTTCTGATCCTGTAATATTAAATGGAACCGCAACACCGAACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTAGAAGCAGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTTTGAGGATCGATGAGCCTTTGTGGATGAAGACTATGAATGATGGGAGGTATATTCTTCATCGTGACAGCTATGACAAAATATTTCCTAAAACCAATCACTTAAAATCTTCTAGTGCTCGTACTGAATCATCGAAAGCTTCTGGAGTGGTGACAATGAGTGCAATGCAATTGGTTGATGTGTTTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACGGTCGTTATAAATGCAGAGACATTTCATATTATTGACCCTGGGATGCCTGGAAATCATAGTGGCGCTTTACAGTTGATGTATGAACAAATGCACATATTTTCACCCCTCGTACCGCCTCGGGATTTCTGCTTCCTTCGGCATTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATAGTGGATGTTTCATATGAATTCTTGAAGGATAATATCTTCTCTGCCCGCAGCTGGAGGCTTCCTTCTGGGTGCATGATTCAAGAAATGCCCAATGGGTGCTCTAAGATTACCTGGGTTGAGCATGTGCAAGTGGACGATAAAACACAAACCCACCGGCTGTATCGGGATCTTGTCTTCAATACTATGGCATATGGAGCTGAAAGATGGGTTTTCACTCTCCAAAGGATGTGTGAGAGATTAGCTTACACATTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGCTGACTTCTCTTGAAGGTAGGAAGAGCATAATGAAGCTGTCACATAGGATGGTAAAAAATTTCTGTGGCGTACTGAGCATGTCTGGTAAATTAGATTTCCCTCAATTATCTGAAGTAAACAATACTGGTGTTCGAATCTCTGTTCGGGTTAGCTCAGAACTTGGGCAGCCCTGTGGGACAGTCGTTAGCGCCGCGACATCACTTTGGCTTCCCCTACAACCTGAAAGCATCTTTAATTTCTTCAGGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTTTCTAATGGAAACCCAGTTAGTGAAATTGCGCACATCTTAACCGGAGTTTATCCAGGAAACTCGATATCGATAATCCGGCCATTTGTCCCGACCGAGAATAACATGCTGATTCTTCAAGAGAGCTGCATAGATCCGCTGGGATCCTTGGTGGTATATGCGCCCATCGACATGCCTGCTATGAACATTGCAACAAGCGGTCAGGACTCATCTGAGATACCGATACTCCCTTCGGGGTTTGTGATCACTGGGGATGGTCGTGCTAACACAGGAGTTGGAGCTTCAACCAGCACAACCTCGGGGAAGCCAAGCGGGTCTCTCTTAACTGTAGCCTTCCAGATATTGGTGTCAAGTGGATCAAATTCGAAACAGCTGAATGTAGAATCTGTGGCAACAGTGAATACCCTTATCAGTGCTACTGTTCAGAGGATAAAGGCTGCACTGAATTGCTCTGCCTTGGATTGA 2133 44.3 MDFMVEGGGGNGGGSGDEHEVSDDRKGKKVYHRHTPFQIQHLESFFRDCPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSTLRSENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDMPPRSSLNPIVANPAIDLISDPVILNGTATPNQSRGINDLENALMLEAAATALEELIRLLRIDEPLWMKTMNDGRYILHRDSYDKIFPKTNHLKSSSARTESSKASGVVTMSAMQLVDVFLDADKWADLFPTVVINAETFHIIDPGMPGNHSGALQLMYEQMHIFSPLVPPRDFCFLRHCQQIELGVWVIVDVSYEFLKDNIFSARSWRLPSGCMIQEMPNGCSKITWVEHVQVDDKTQTHRLYRDLVFNTMAYGAERWVFTLQRMCERLAYTFRDCAPSHELGGVLTSLEGRKSIMKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNTGVRISVRVSSELGQPCGTVVSAATSLWLPLQPESIFNFFRDEKARVQWDVLSNGNPVSEIAHILTGVYPGNSISIIRPFVPTENNMLILQESCIDPLGSLVVYAPIDMPAMNIATSGQDSSEIPILPSGFVITGDGRANTGVGASTSTTSGKPSGSLLTVAFQILVSSGSNSKQLNVESVATVNTLISATVQRIKAALNCSALD 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38643764 38649204 - Sed0021688.1 Sed05g2729 715355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2729 710 Gene3D - 15 102 - -
Sed05g2729 710 SUPERFAMILY Bet v1-like 218 449 - -
Sed05g2729 710 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677(InterPro)
Sed05g2729 710 MobiDBLite consensus disorder prediction 1 29 - -
Sed05g2729 710 Pfam Homeodomain 28 83 IPR001356 GO:0003677(InterPro)
Sed05g2729 710 SUPERFAMILY Homeodomain-like 15 86 IPR009057 -
Sed05g2729 710 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed05g2729 710 MobiDBLite consensus disorder prediction 78 97 - -
Sed05g2729 710 SUPERFAMILY Bet v1-like 470 669 - -
Sed05g2729 710 Coils Coil 84 104 - -
Sed05g2729 710 ProSiteProfiles START domain profile. 216 450 IPR002913 GO:0008289(InterPro)
Sed05g2729 710 CDD homeodomain 28 86 IPR001356 GO:0003677(InterPro)
Sed05g2729 710 Pfam START domain 227 447 IPR002913 GO:0008289(InterPro)
Sed05g2729 710 Gene3D - 225 431 IPR023393 -
Sed05g2729 710 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Sed05g2729 710 CDD START_ArGLABRA2_like 221 446 - -
Sed05g2729 710 SMART START_1 225 447 IPR002913 GO:0008289(InterPro)
Sed05g2729 710 Coils Coil 127 154 - -
Sed05g2729 710 SMART HOX_1 27 89 IPR001356 GO:0003677(InterPro)
Sed05g2729 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 707 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2729 Sed-Chr5:38643764 Sed08g2020 Sed-Chr8:34486103 4.10E-201 dispersed
Sed05g2729 Sed-Chr5:38643764 Sed09g0079 Sed-Chr9:618782 7.30E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38646 PF01852 START 3.70E-37 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2729 K09338 - csv:101205899 1233.39