Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2802 ATGCTCTCACTGCGTTCATGTTACAATCTATGGCCTCATCGACAATTTAGGAATCTCATCTTCTCCATAAACCCTAAACCCCCCTCTTTCAAACCCATCTCTCTGAATTCTCCAATGTCTTCTCGCCCTTCCGCTTTCGACGCCCTCATGTCCGGTGCCCGCGCCGCCGCCGCCGCCAAGAAGAAGCCTGCAAATACCTCTCCCAAGAAGCGTAAAGCCCTAGATTCTGTAGACCCTCTTCCCAAGCGTAGCTCTCCGCCGCCCAGTGAACCGCAGGCCGTGGTTTTTCCAGAAACCAAGAATGTGGCGGCGGTGAACAAGACATGTGCGGGCAGTGTTCAAGAAAGAACTGCCAAATTGAAGGGCTCTATTTCGGAGTTGAAGAAGAAGGCGAAGGATTTCAACTCGGAGAATGTTGCGTGTTGGAAAGAGGGCGAAAGGGTTCCCTTTTTGTTTCTGTGTTTGGGGTTCGATATGGTTTCGGGTGAGTCTAGTAGGATTATTATAACTGATATTGTGTGCAACATGTTGAGGACTGTCATGGATACCACACCAGAAGATTTGCTGCCCACTGTGTATCTTTTGGCAAATAAGATTGCTCCGGCCCACGAAGGGCTTGAATTGGGGATTGGGGAGGCTTCAATTATCAAAGCTCTTTCTGAGGCATTTGGGAGAACGGAGGGACATGTTAAAAATCAGTACAAGGAGTTGGGAGATTTAGGTCTTGTTGCTAAGGCGAGCCGTTCGTCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTTCCAAAGTATTTGATACATTTCGGCTGATTGCTAAGGAATCTGGAAAGGATAGTCAAGAGAAGAAAAAGAACCGTATGAAATCACTGCTTGTTGCTGCCACTGACTGCGAACCATTATATATGATTAGATTGTTGCAGGCAAAATTACGAATTGGACTTGCTGAGCAAACTCTTTTAGCTGCTTTAGGGCAAGCGGCTGTTCATGCTGAAAAACACTCTACACCACCACCAAACATTCAATCTCCTCTAGAAGAGGCTGCAAAGATTGTTAAGCAGGTGTATTCTGTACTCCCAGTTTATGATAAACTTGTCCTTGAACTTCTTAGTGGGGGCGTATGGAATCTTTCAAAAACATGCAACTTTAGTCCGGGAATTCCAATTGGACCCATGCTAGCAAAACCAACAAAGGGAGTGTCCGAGATCGTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAGGACGGTTCTGTTGAGATATACAGTCGAAATGCTGAACGAAACACCGGAAAGTTCCCAGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCCGTAAGATCATTTGTTTTGGATTGTGAACTTGTTGCTTATGATCGTGAAAAAAAGGAGATTCTGCCTTTTCAGATTCTGAGTACTCGAGCTCGCAAGAATGTGGCTGTGAGTGATATTAAGGTTGAAGTGTGTGCATTTGCTTTTGATTTACTGTATCTTGATGGTCAACCACTTATCCAGAAAGAGCTTAATGTTCGAAGAGAGCTTCTCTATGACTCATTTGTGGAAGAATCTGGATATTTTCAATTTGCCACAGCAATAACAACAAACGATCTTGAGGAAATACAGAAGTTCCTCGATGCATCTGTTGATGGATGTTGTGAGGGTTTAATTATCAAAACTTTGAATCGGGATGCTACCTATGAGCCTTCCAAGAGGTCACTTAACTGGTTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCGCTTGACCTGGTACCAATTGCTGCTTTCCATGGCCGGGGGAAGCGTACAGGTGTATATGGCGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGTTTTACTGAAGCAGTTCTTGAGGAACGATCTGCCAGTCTCCGTTCTAAAGTCATTCCTGGACCAAAGTCATATTATCGGTATGGGGCTACACTGAATCCAGACGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCTGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTCGGCATTGTGGATTCTGTAAAGGGAATTTCTCTTCGGTTTCCGCGTCTTGTTCGTTTAAGGGAAGACAAAACTCCAGAGGAAGCCTCCTCATCAGAGCAGGTTGCCGATATGTATAATGCTCAGAAACAGAACCACCAAAACAATCAAGATGACAATGAAGACGATGAGGATTGA 2298 44.13 MLSLRSCYNLWPHRQFRNLIFSINPKPPSFKPISLNSPMSSRPSAFDALMSGARAAAAAKKKPANTSPKKRKALDSVDPLPKRSSPPPSEPQAVVFPETKNVAAVNKTCAGSVQERTAKLKGSISELKKKAKDFNSENVACWKEGERVPFLFLCLGFDMVSGESSRIIITDIVCNMLRTVMDTTPEDLLPTVYLLANKIAPAHEGLELGIGEASIIKALSEAFGRTEGHVKNQYKELGDLGLVAKASRSSQSMMRKPDALTISKVFDTFRLIAKESGKDSQEKKKNRMKSLLVAATDCEPLYMIRLLQAKLRIGLAEQTLLAALGQAAVHAEKHSTPPPNIQSPLEEAAKIVKQVYSVLPVYDKLVLELLSGGVWNLSKTCNFSPGIPIGPMLAKPTKGVSEIVNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFVLDCELVAYDREKKEILPFQILSTRARKNVAVSDIKVEVCAFAFDLLYLDGQPLIQKELNVRRELLYDSFVEESGYFQFATAITTNDLEEIQKFLDASVDGCCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFTEAVLEERSASLRSKVIPGPKSYYRYGATLNPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSVKGISLRFPRLVRLREDKTPEEASSSEQVADMYNAQKQNHQNNQDDNEDDED 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39316982 39324471 + Sed0019273.1 Sed05g2802 715428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2802 765 Gene3D - 124 393 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2802 765 CDD Adenylation_DNA_ligase_I_Euk 380 598 - -
Sed05g2802 765 Gene3D - 401 599 - -
Sed05g2802 765 FunFam DNA ligase 600 759 - -
Sed05g2802 765 SUPERFAMILY Nucleic acid-binding proteins 603 749 IPR012340 -
Sed05g2802 765 CDD OBF_DNA_ligase_I 603 748 - -
Sed05g2802 765 MobiDBLite consensus disorder prediction 56 93 - -
Sed05g2802 765 ProSitePatterns ATP-dependent DNA ligase signature 2. 569 595 IPR016059 GO:0003909(InterPro)
Sed05g2802 765 MobiDBLite consensus disorder prediction 738 754 - -
Sed05g2802 765 Pfam ATP dependent DNA ligase domain 391 595 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2802 765 MobiDBLite consensus disorder prediction 729 765 - -
Sed05g2802 765 Gene3D DNA ligase/mRNA capping enzyme 420 545 - -
Sed05g2802 765 ProSiteProfiles ATP-dependent DNA ligase family profile. 497 633 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2802 765 Pfam ATP dependent DNA ligase C terminal region 620 731 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2802 765 Gene3D - 600 763 IPR012340 -
Sed05g2802 765 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 131 382 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2802 765 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 415 423 IPR016059 GO:0003909(InterPro)
Sed05g2802 765 NCBIfam ATP-dependent DNA ligase 207 746 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Sed05g2802 765 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 101 763 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Sed05g2802 765 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 383 601 - -
Sed05g2802 765 FunFam DNA ligase 126 393 - -
Sed05g2802 765 FunFam DNA ligase 391 597 - -
Sed05g2802 765 Pfam DNA ligase N terminus 149 324 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2802 Sed-Chr5:39316982 Sed05g2803 Sed-Chr5:39316982 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2802 K10747 - csv:101213447 1254.2