Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2803 ATGCTCTCACTGCGTTCATGTTACAATCTATGGCCTCATCGACAATTTAGGAATCTCATCTTCTCCATAAACCCTAAACCCCCCTCTTTCAAACCCATCTCTCTGAATTCTCCAATGTCTTCTCGCCCTTCCGCTTTCGACGCCCTCATGTCCGGTGCCCGCGCCGCCGCCGCCGCCAAGAAGAAGCCTGCAAATACCTCTCCCAAGAAGCGTAAAGCCCTAGATTCTGTAGACCCTCTTCCCAAGCGTAGCTCTCCGCCGCCCAGTGAACCGCAGGCCGTGGTTTTTCCAGAAACCAAGAATGTGGCGGCGGTGAACAAGACATGTGCGGGCAGTGTTCAAGAAAGAACTGCCAAATTGAAGGGCTCTATTTCGGAGTTGAAGAAGAAGGCGAAGGATTTCAACTCGGAGAATGTTGCGTGTTGGAAAGAGGGCGAAAGGGTTCCCTTTTTGTTTCTGTGTTTGGGGTTCGATATGGTTTCGGGTGAGTCTAGTAGGATTATTATAACTGATATTGTGTGCAACATGTTGAGGACTGTCATGGATACCACACCAGAAGATTTGCTGCCCACTGTGTATCTTTTGGCAAATAAGATTGCTCCGGCCCACGAAGGGCTTGAATTGGGGATTGGGGAGGCTTCAATTATCAAAGCTCTTTCTGAGGCATTTGGGAGAACGGAGGGACATGTTAAAAATCAGTACAAGGAGTTGGGAGATTTAGGTCTTGTTGCTAAGGCGAGCCGTTCGTCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTTCCAAAGTATTTGATACATTTCGGCTGATTGCTAAGGAATCTGGAAAGGATAGTCAAGAGAAGAAAAAGAACCGTATGAAATCACTGCTTGTTGCTGCCACTGACTGCGAACCATTATATATGATTAGATTGTTGCAGGCAAAATTACGAATTGGACTTGCTGAGCAAACTCTTTTAGCTGCTTTAGGGCAAGCGGCTGTTCATGCTGAAAAACACTCTACACCACCACCAAACATTCAATCTCCTCTAGAAGAGGCTGCAAAGATTGTTAAGCAGGTGTATTCTGTACTCCCAGTTTATGATAAACTTGTCCTTGAACTTCTTAGTGGGGGCGTATGGAATCTTTCAAAAACATGCAACTTTAGTCCGGGAATTCCAATTGGACCCATGCTAGCAAAACCAACAAAGGGAGTGTCCGAGATCGTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAGGACGGTTCTGTTGAGATATACAGTCGAAATGCTGAACGAAACACCGGAAAGTTCCCAGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCCGTAAGATCATTTGTTTTGGATTGTGAACTTGTTGCTTATGATCGTGAAAAAAAGGAGATTCTGCCTTTTCAGATTCTGAGTACTCGAGCTCGCAAGAATGTGGCTGTGAGTGATATTAAGGTTGAAGTGTGTGCATTTGCTTTTGATTTACTGTATCTTGATGGTCAACCACTTATCCAGAAAGAGCTTAATGTTCGAAGAGAGCTTCTCTATGACTCATTTGTGGAAGAATCTGGATATTTTCAATTTGCCACAGCAATAACAACAAACGATCTTGAGGAAATACAGAAGTTCCTCGATGCATCTGTTGATGGATGTTGTGAGGGTTTAATTATCAAAACTTTGAATCGGGATGCTACCTATGAGCCTTCCAAGAGGTCACTTAACTGGTTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCGCTTGACCTGGTACCAATTGCTGCTTTCCATGGCCGGGGGAAGCGTACAGGTGTATATGGCGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGTTTTACTGAAGCAGTTCTTGAGGAACGATCTGCCAGTCTCCGTTCTAAAGTCATTCCTGGACCAAAGGTCTATCTTCTAACTCCTATTATTGACCCAAACAATGGGGTTCTCTATATCATATATCATATATCATATATGTCTCTACTTTTTAACCTAACATTTTCTAGTCAATGTTAG 2121 43.23 MLSLRSCYNLWPHRQFRNLIFSINPKPPSFKPISLNSPMSSRPSAFDALMSGARAAAAAKKKPANTSPKKRKALDSVDPLPKRSSPPPSEPQAVVFPETKNVAAVNKTCAGSVQERTAKLKGSISELKKKAKDFNSENVACWKEGERVPFLFLCLGFDMVSGESSRIIITDIVCNMLRTVMDTTPEDLLPTVYLLANKIAPAHEGLELGIGEASIIKALSEAFGRTEGHVKNQYKELGDLGLVAKASRSSQSMMRKPDALTISKVFDTFRLIAKESGKDSQEKKKNRMKSLLVAATDCEPLYMIRLLQAKLRIGLAEQTLLAALGQAAVHAEKHSTPPPNIQSPLEEAAKIVKQVYSVLPVYDKLVLELLSGGVWNLSKTCNFSPGIPIGPMLAKPTKGVSEIVNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFVLDCELVAYDREKKEILPFQILSTRARKNVAVSDIKVEVCAFAFDLLYLDGQPLIQKELNVRRELLYDSFVEESGYFQFATAITTNDLEEIQKFLDASVDGCCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFTEAVLEERSASLRSKVIPGPKVYLLTPIIDPNNGVLYIIYHISYMSLLFNLTFSSQC 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39316982 39324471 + Sed0019273.2 Sed05g2803 715429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2803 706 Gene3D - 124 393 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2803 706 CDD Adenylation_DNA_ligase_I_Euk 380 598 - -
Sed05g2803 706 FunFam DNA ligase 391 597 - -
Sed05g2803 706 MobiDBLite consensus disorder prediction 56 93 - -
Sed05g2803 706 ProSitePatterns ATP-dependent DNA ligase signature 2. 569 595 IPR016059 GO:0003909(InterPro)
Sed05g2803 706 Gene3D - 401 599 - -
Sed05g2803 706 Gene3D - 600 684 IPR012340 -
Sed05g2803 706 Pfam ATP dependent DNA ligase domain 391 595 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2803 706 Pfam ATP dependent DNA ligase C terminal region 620 665 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2803 706 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 101 672 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Sed05g2803 706 SUPERFAMILY Nucleic acid-binding proteins 603 674 IPR012340 -
Sed05g2803 706 ProSiteProfiles ATP-dependent DNA ligase family profile. 497 633 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2803 706 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 131 382 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2803 706 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 415 423 IPR016059 GO:0003909(InterPro)
Sed05g2803 706 Pfam DNA ligase N terminus 149 324 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed05g2803 706 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 383 601 - -
Sed05g2803 706 FunFam DNA ligase 126 393 - -
Sed05g2803 706 Gene3D DNA ligase/mRNA capping enzyme 420 545 - -
Sed05g2803 706 NCBIfam ATP-dependent DNA ligase 207 671 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2803 K10747 - - csv:101213447 1112.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2802 Sed-Chr5:39316982 Sed05g2803 Sed-Chr5:39316982 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1100 . . . Bda09g01436 . . . . . . . . . . . . . . . . . . . . Cla02g02101 Cam02g2230 Cec02g2268 Cco02g2308 Clacu02g2212 Cmu02g2147 Cre02g2464 . . . . . Csa06g01233 Chy11g00843 . Blo08g00019 . . . Bpe08g00178 . Bma07g00168 . Sed05g2803 . Cmo20g00553 . Cma20g00522 . Car20g00461 Cpe16g00505 . Bhi10g00144 Tan05g0202 Cmetu11g1276 . Hepe08g0926 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g1845 . 59 797 Core DNA Replication Machinery Family AT4G14700 64.7 5.4e-274 941.4
Sed06g1845 . 70 797 Core DNA Replication Machinery Family AT4G12620 68.0 1.1e-282 970.3
Sed10g1284 . 2 361 Core DNA Replication Machinery Family AT2G37560 66.9 5.5e-143 505.0
Sed04g0364 . 12 418 Core DNA Replication Machinery Family AT2G01120 65.9 3.8e-154 542.3
Sed09g0048 . 3 535 Core DNA Replication Machinery Family AT4G29910 59.3 1.6e-176 617.1
Sed02g0083 . 59 334 Core DNA Replication Machinery Family AT1G26840 60.8 7.4e-85 311.6
Sed06g1123 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed06g1124 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed06g1125 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed06g1126 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed04g3507 . 1 801 Core DNA Replication Machinery Family AT1G79150 60.5 1.0e-243 840.9
Sed02g0928 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1342.0
Sed02g0929 . 8 857 Core DNA Replication Machinery Family AT1G44900 76.5 0.0e+00 1243.4
Sed10g0145 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.5 4.1e-268 921.4
Sed10g0146 . 1 457 Core DNA Replication Machinery Family AT5G46280 84.4 2.9e-221 765.8
Sed04g3910 . 1 845 Core DNA Replication Machinery Family AT2G16440 74.7 0.0e+00 1175.6
Sed11g0172 . 1 735 Core DNA Replication Machinery Family AT2G07690 77.1 0.0e+00 1103.2
Sed14g1703 . 59 878 Core DNA Replication Machinery Family AT5G44635 71.3 0.0e+00 1176.8
Sed07g0570 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.6 0.0e+00 1208.0
Sed05g3752 . 52 468 Core DNA Replication Machinery Family AT2G29680 64.0 2.3e-153 540.0
Sed05g3753 . 52 468 Core DNA Replication Machinery Family AT2G29680 64.0 2.3e-153 540.0
Sed05g3754 . 52 468 Core DNA Replication Machinery Family AT2G29680 64.0 2.3e-153 540.0
Sed05g3752 . 27 429 Core DNA Replication Machinery Family AT1G07270 60.7 1.1e-138 491.1
Sed05g3753 . 27 429 Core DNA Replication Machinery Family AT1G07270 60.7 1.1e-138 491.1
Sed05g3754 . 27 429 Core DNA Replication Machinery Family AT1G07270 60.7 1.1e-138 491.1
Sed07g0238 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.9 1.4e-258 889.8
Sed02g0741 . 24 790 Core DNA Replication Machinery Family AT3G09660 74.4 0.0e+00 1111.7
Sed06g0762 . 13 642 Core DNA Replication Machinery Family AT2G14050 78.4 1.5e-287 986.1
Sed06g0763 . 13 641 Core DNA Replication Machinery Family AT2G14050 78.2 1.4e-285 979.5
Sed06g0764 . 13 591 Core DNA Replication Machinery Family AT2G14050 77.5 2.1e-260 896.0
Sed05g3488 . 1 411 Core DNA Replication Machinery Family AT2G20980 54.7 6.8e-113 405.2
Sed05g2402 . 7 971 Core DNA Replication Machinery Family AT1G77320 50.1 2.7e-259 892.9
Sed09g1501 . 1 198 Core DNA Replication Machinery Family AT1G80190 65.8 1.3e-75 280.4
Sed09g1502 . 1 198 Core DNA Replication Machinery Family AT1G80190 65.8 1.3e-75 280.4
Sed09g1503 . 26 223 Core DNA Replication Machinery Family AT1G80190 65.8 1.3e-75 280.4
Sed13g1071 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 1.8e-61 233.0
Sed03g0379 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 4.8e-69 258.5
Sed03g0380 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 4.8e-69 258.5
Sed03g0381 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 4.8e-69 258.5
Sed03g0379 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 4.8e-69 258.5
Sed03g0380 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 4.8e-69 258.5
Sed03g0381 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 4.8e-69 258.5
Sed02g1664 . 1 164 Core DNA Replication Machinery Family AT5G49010 61.0 4.9e-48 188.7
Sed01g0438 . 11 1537 Core DNA Replication Machinery Family AT5G67100 60.5 0.0e+00 1758.8
Sed06g1729 . 2 624 Core DNA Replication Machinery Family AT1G67630 63.1 3.3e-223 772.3
Sed09g0379 . 1 443 Core DNA Replication Machinery Family AT1G67320 65.2 5.4e-184 641.7
Sed10g1644 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 5.5e-175 611.7
Sed10g1645 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 5.5e-175 611.7
Sed03g2353 . 1 1081 Core DNA Replication Machinery Family AT5G63960 79.9 0.0e+00 1779.2
Sed12g1248 . 1 436 Core DNA Replication Machinery Family AT2G42120 75.0 6.3e-200 694.5
Sed12g1249 . 1 436 Core DNA Replication Machinery Family AT2G42120 75.0 6.3e-200 694.5
Sed02g0362 . 1 438 Core DNA Replication Machinery Family AT2G42120 72.1 8.5e-197 684.1
Sed12g1250 . 1 352 Core DNA Replication Machinery Family AT2G42120 77.0 7.7e-166 581.3
Sed12g1251 . 1 352 Core DNA Replication Machinery Family AT2G42120 77.0 7.7e-166 581.3
Sed12g1252 . 1 364 Core DNA Replication Machinery Family AT2G42120 74.2 7.5e-161 564.7
Sed02g0363 . 1 368 Core DNA Replication Machinery Family AT2G42120 71.5 2.0e-158 556.6
Sed02g0364 . 1 323 Core DNA Replication Machinery Family AT2G42120 69.3 1.2e-134 477.6
Sed09g0379 . 1 443 Core DNA Replication Machinery Family AT1G67320 65.2 5.4e-184 641.7
Sed05g1212 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2965.3
Sed05g1215 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2965.3
Sed05g1213 . 1 2113 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2954.1
Sed05g1214 . 1 2113 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2954.1
Sed05g1212 . 24 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2915.2
Sed05g1215 . 24 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2915.2
Sed05g1213 . 24 2219 Core DNA Replication Machinery Family AT2G27120 66.9 0.0e+00 2904.0
Sed05g1214 . 24 2219 Core DNA Replication Machinery Family AT2G27120 66.9 0.0e+00 2904.0
Sed08g2017 . 45 524 Core DNA Replication Machinery Family AT5G22110 69.6 4.4e-194 675.2
Sed01g3225 . 1 925 Core DNA Replication Machinery Family AT5G22010 63.0 3.3e-304 1042.0
Sed03g1302 . 1 333 Core DNA Replication Machinery Family AT1G63160 90.4 8.4e-173 604.0
Sed03g1303 . 1 333 Core DNA Replication Machinery Family AT1G63160 90.4 8.4e-173 604.0
Sed14g0728 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 2.4e-178 622.5
Sed06g0991 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.5 8.2e-152 534.3
Sed03g0419 . 1 360 Core DNA Replication Machinery Family AT1G77470 75.8 2.6e-154 542.7
Sed03g0420 . 1 283 Core DNA Replication Machinery Family AT1G77470 75.3 8.6e-118 421.4
Sed03g1813 . 26 618 Core DNA Replication Machinery Family AT2G06510 66.6 2.8e-246 849.0
Sed04g0901 . 31 693 Core DNA Replication Machinery Family AT2G06510 51.0 5.0e-195 678.7
Sed08g0277 . 1 622 Core DNA Replication Machinery Family AT5G08020 68.2 1.1e-247 853.6
Sed12g2011 . 1 622 Core DNA Replication Machinery Family AT5G08020 68.1 3.3e-244 842.0
Sed04g0901 . 7 801 Core DNA Replication Machinery Family AT5G45400 51.3 7.1e-224 775.0
Sed08g0277 . 1 617 Core DNA Replication Machinery Family AT5G61000 67.5 1.3e-243 840.1
Sed12g2011 . 1 617 Core DNA Replication Machinery Family AT5G61000 66.2 1.4e-237 820.1
Sed04g0901 . 27 813 Core DNA Replication Machinery Family AT4G19130 54.2 1.1e-223 774.2
Sed04g0381 . 1 377 Core DNA Replication Machinery Family AT5G26680 86.7 3.1e-188 655.6
Sed04g0382 . 1 377 Core DNA Replication Machinery Family AT5G26680 86.7 3.1e-188 655.6
Sed04g0380 . 1 361 Core DNA Replication Machinery Family AT5G26680 88.4 1.3e-183 640.2
Sed12g0307 . 12 1111 Core DNA Replication Machinery Family AT1G08840 51.9 9.1e-290 994.2
Sed05g2802 . 40 753 Core DNA Replication Machinery Family AT1G08130 70.9 4.3e-292 1001.5
Sed05g2803 . 40 672 Core DNA Replication Machinery Family AT1G08130 69.6 1.3e-251 867.1
Sed05g2802 . 163 752 Core DNA Replication Machinery Family AT1G49250 69.0 1.1e-237 820.5
Sed05g2803 . 163 672 Core DNA Replication Machinery Family AT1G49250 68.7 1.7e-201 700.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32