Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2829 ATGGAGTCCGGCCAGGATTACTGCTACACGAATGGGCATGGCGCGGCGGATGCGTTGGGGTGGGGGGCGGCGGCGGAGGGGCTGAGAGGGAGCCACGTGGATGAGGTGAAGAGGATGGTGGGGGACTACCGGGGGGCAGTGGTGCGCCTCGGGGGAGGGGGTTTGACGATCGGGCAGGTGGCGGCGGTGGCGATGCACGACGGCGGAGTGACGGTGGAGCTGAGTGAGGCGGCGAGGCCGGGAGTGAAGGCGAGCAGTGATTGGGTGATGGAGAGTATGAAGAAAGGGACGGATAGTTATGGAGTCACCACTGGGTTTGGAGCTACCTCTCATCGTAGGACCAACCAAGGGGCTGCCCTACAGAAGGAGCTTATTAGATTCTTGAACGCCGGAATATTCGGGAATGGAACAGAATCAAACCACACGCTGCCGCACACCGCCACAAGAGCCGCCATGTTGGTCAGAATCAACACCCTTCTCCAAGGCTACTCCGGCATCCGATTCGAGATTTTGGAGTCAATTACAAAGCTCCTCAACCTCAACGTTACTCCTTGCCTTCCCCTGCGTGGCACCATCACAGCCTCCGGCGACTTGGTTCCCTTTTCTTACCTCGCCGGATTATTGACCGGCCGCCCCAATGCCAAGGCCGTCGGCCCCACCGGGGAGCTTCTCGATGCCGGGGCAGCCTTCGAACGTGCTGGCCTCACTGGCGGCTTCTTCGAGCTGCAGCCTAAAGAAGGTCTTGCACTTGTCAATGGCACTGGCGTTGGTTCTGGTTTGGCTTCTATTGTTCTGTTCGAGGCGAATGTGTTGGCTCTTTTATCTGAGGTTATTTCTGCAATATTTGCTGAAGTTATGCAGGGGAAGCCTGAGTTCACTGACCATTTGACTCATAAATTGAAGCACCATCCCGGTCAGATTGAAGCTGCCGCTATGATGGAGTATATTTTGGATGGGAGTGCTTTTGTTAAAGATGCTAAGAAGTTACATGAGTTGGATCCTCTACAGAAGCCGAAACAAGATCGTTATGCTCTTCGAACTTCGCCTCAATGGCTCGGCCCTCAAATTGAAGTGATTCGACATTCGACGAGGTCAATCGAGAGAGAGATCAACTCAGTGAATGACAATCCGTTGATTGATGTTTCGAGGAATAAAGCCATACATGGAGGCAACTTTCAAGGAACTCCAATTGGGGTGTCCATGGACAACACTAGATTAGCTCTTGCCTCGATTGGGAAGCTTTTGTTTGCTCAATTCTCTGAACTTGTGAATGATTTCTATAACAATGGTCTGCCTTCAAACCTCTCAGGAGGAAGTAATCCAAGTTTGGATTATGGATTTAAAGGGGCTGAAATTGCCATGGCTTCGTATTGCTCGGAGTTGCAATACTTGGCTAACCCAGTTACCACTCATGTTCAAAGCGCAGAGCAACACAACCAAGACGTGAACTCACTCGGTCTAATTTCTTCAAGAAAAACAGCAGAGGCAATAGATATCTTGAAGCTGATGAGCACAACTTTCCTAGTTGCTCTCTGCCAAGCCATAGATTTGAGACACATTGAAGAGAATCTAAAGAGCACAGTGAAAAACACAGTGAGTCAAGTGGCAAAAAAGGTTTTAACAATTGGAGTGAATGGAGAGCTCCATCCATCAAGATTCTGTGAGAAAGATCTGCTCAAAGTAATTGACAGAGAACATGTTTTTGCTTACATTGATGACCCATGCAGCATGACATATCCTCTAATGCAAAAGCTGAGGCAAGTTCTTGTAGAACATGCATTAAACAACAATGATGATCTAAAGAACTCAAAGTCCTCAATCTTTCTAAAGATTGGAGCTTTTGAGGAGGAATTGAAAACCCTTTTGCCAAAAGAAGTTGAAAGTGGAAGGCTAGCCATTTTCAAAGGAAAACCAACAATTCCCAACAAGATTAAGGATTGTAGATCATACCCACTTTACAGATTTGTGAGAGAAGAATTGGGAACTTCTATTTTAACTGGAGAAAAAGTGAAGTCCCCTGGGGAAGAATTTGACAAGGTTTTTGCTGCAATTTGTGAAGGGAAAATCATTGATCCTCTGCTTGAATGTGTCAAGCTTTGGGATGGGACCCCTCTTCCTATAAATTAA 2127 48.0 MESGQDYCYTNGHGAADALGWGAAAEGLRGSHVDEVKRMVGDYRGAVVRLGGGGLTIGQVAAVAMHDGGVTVELSEAARPGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNLNVTPCLPLRGTITASGDLVPFSYLAGLLTGRPNAKAVGPTGELLDAGAAFERAGLTGGFFELQPKEGLALVNGTGVGSGLASIVLFEANVLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAMMEYILDGSAFVKDAKKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTRSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLKSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREHVFAYIDDPCSMTYPLMQKLRQVLVEHALNNNDDLKNSKSSIFLKIGAFEEELKTLLPKEVESGRLAIFKGKPTIPNKIKDCRSYPLYRFVREELGTSILTGEKVKSPGEEFDKVFAAICEGKIIDPLLECVKLWDGTPLPIN 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39482796 39488317 - Sed0023091.1 Sed05g2829 715455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2829 708 Gene3D Fumarase/aspartase (Central domain) 256 702 - -
Sed05g2829 708 CDD PAL-HAL 53 518 IPR001106 -
Sed05g2829 708 Pfam Aromatic amino acid lyase 55 532 IPR001106 -
Sed05g2829 708 Gene3D - 521 642 IPR023144 -
Sed05g2829 708 PANTHER HISTIDINE AMMONIA-LYASE 17 707 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed05g2829 708 FunFam Phenylalanine ammonia-lyase 9 254 - -
Sed05g2829 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed05g2829 708 FunFam Phenylalanine ammonia-lyase 255 557 - -
Sed05g2829 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Sed05g2829 708 SUPERFAMILY L-aspartase-like 17 707 IPR008948 GO:0003824(InterPro)
Sed05g2829 708 Gene3D - 9 254 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2829 Sed-Chr5:39482796 Sed12g0525 Sed-Chr12:3180763 0.00E+00 dispersed
Sed05g2829 Sed-Chr5:39482796 Sed05g2830 Sed-Chr5:39482796 0.00E+00 tandem
Sed14g0397 Sed-Chr14:4102041 Sed05g2829 Sed-Chr5:39482796 0.00E+00 wgd
Sed03g2015 Sed-Chr3:14065462 Sed05g2829 Sed-Chr5:39482796 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2829 K10775 - csv:101218156 1279.62