Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2830 ATGATAGAAGATTTTCTACCATTCAGATTCTTGAACGCCGGAATATTCGGGAATGGAACAGAATCAAACCACACGCTGCCGCACACCGCCACAAGAGCCGCCATGTTGGTCAGAATCAACACCCTTCTCCAAGGCTACTCCGGCATCCGATTCGAGATTTTGGAGTCAATTACAAAGCTCCTCAACCTCAACGTTACTCCTTGCCTTCCCCTGCGTGGCACCATCACAGCCTCCGGCGACTTGGTTCCCTTTTCTTACCTCGCCGGATTATTGACCGGCCGCCCCAATGCCAAGGCCGTCGGCCCCACCGGGGAGCTTCTCGATGCCGGGGCAGCCTTCGAACGTGCTGGCCTCACTGGCGGCTTCTTCGAGCTGCAGCCTAAAGAAGGTCTTGCACTTGTCAATGGCACTGGCGTTGGTTCTGGTTTGGCTTCTATTGTTCTGTTCGAGGCGAATGTGTTGGCTCTTTTATCTGAGGTTATTTCTGCAATATTTGCTGAAGTTATGCAGGGGAAGCCTGAGTTCACTGACCATTTGACTCATAAATTGAAGCACCATCCCGGTCAGATTGAAGCTGCCGCTATGATGGAGTATATTTTGGATGGGAGTGCTTTTGTTAAAGATGCTAAGAAGTTACATGAGTTGGATCCTCTACAGAAGCCGAAACAAGATCGTTATGCTCTTCGAACTTCGCCTCAATGGCTCGGCCCTCAAATTGAAGTGATTCGACATTCGACGAGGTCAATCGAGAGAGAGATCAACTCAGTGAATGACAATCCGTTGATTGATGTTTCGAGGAATAAAGCCATACATGGAGGCAACTTTCAAGGAACTCCAATTGGGGTGTCCATGGACAACACTAGATTAGCTCTTGCCTCGATTGGGAAGCTTTTGTTTGCTCAATTCTCTGAACTTGTGAATGATTTCTATAACAATGGTCTGCCTTCAAACCTCTCAGGAGGAAGTAATCCAAGTTTGGATTATGGATTTAAAGGGGCTGAAATTGCCATGGCTTCGTATTGCTCGGAGTTGCAATACTTGGCTAACCCAGTTACCACTCATGTTCAAAGCGCAGAGCAACACAACCAAGACGTGAACTCACTCGGTCTAATTTCTTCAAGAAAAACAGCAGAGGCAATAGATATCTTGAAGCTGATGAGCACAACTTTCCTAGTTGCTCTCTGCCAAGCCATAGATTTGAGACACATTGAAGAGAATCTAAAGAGCACAGTGAAAAACACAGTGAGTCAAGTGGCAAAAAAGGTTTTAACAATTGGAGTGAATGGAGAGCTCCATCCATCAAGATTCTGTGAGAAAGATCTGCTCAAAGTAATTGACAGAGAACATGTTTTTGCTTACATTGATGACCCATGCAGCATGACATATCCTCTAATGCAAAAGCTGAGGCAAGTTCTTGTAGAACATGCATTAAACAACAATGATGATCTAAAGAACTCAAAGTCCTCAATCTTTCTAAAGATTGGAGCTTTTGAGGAGGAATTGAAAACCCTTTTGCCAAAAGAAGTTGAAAGTGGAAGGCTAGCCATTTTCAAAGGAAAACCAACAATTCCCAACAAGATTAAGGATTGTAGATCATACCCACTTTACAGATTTGTGAGAGAAGAATTGGGAACTTCTATTTTAACTGGAGAAAAAGTGAAGTCCCCTGGGGAAGAATTTGACAAGGTTTTTGCTGCAATTTGTGAAGGGAAAATCATTGATCCTCTGCTTGAATGTGTCAAGCTTTGGGATGGGACCCCTCTTCCTATAAATTAA 1776 44.43 MIEDFLPFRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNLNVTPCLPLRGTITASGDLVPFSYLAGLLTGRPNAKAVGPTGELLDAGAAFERAGLTGGFFELQPKEGLALVNGTGVGSGLASIVLFEANVLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAMMEYILDGSAFVKDAKKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTRSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLKSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREHVFAYIDDPCSMTYPLMQKLRQVLVEHALNNNDDLKNSKSSIFLKIGAFEEELKTLLPKEVESGRLAIFKGKPTIPNKIKDCRSYPLYRFVREELGTSILTGEKVKSPGEEFDKVFAAICEGKIIDPLLECVKLWDGTPLPIN 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39482796 39488317 - Sed0023091.2 Sed05g2830 715456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2830 591 Gene3D Fumarase/aspartase (Central domain) 139 585 - -
Sed05g2830 591 FunFam Phenylalanine ammonia-lyase 404 525 - -
Sed05g2830 591 FunFam Phenylalanine ammonia-lyase 138 441 - -
Sed05g2830 591 Pfam Aromatic amino acid lyase 24 416 IPR001106 -
Sed05g2830 591 CDD PAL-HAL 9 401 IPR001106 -
Sed05g2830 591 PANTHER HISTIDINE AMMONIA-LYASE 9 590 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed05g2830 591 NCBIfam phenylalanine ammonia-lyase 8 581 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed05g2830 591 Gene3D - 404 525 IPR023144 -
Sed05g2830 591 Gene3D - 7 137 IPR024083 -
Sed05g2830 591 SUPERFAMILY L-aspartase-like 9 590 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2830 Sed-Chr5:39482796 Sed12g0525 Sed-Chr12:3180763 1.60E-283 dispersed
Sed05g2829 Sed-Chr5:39482796 Sed05g2830 Sed-Chr5:39482796 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2830 K10775 - csv:101218156 1101.27