Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2832 ATGATTTTTACTGGGTCTCTGTCCACCACAATTGCCGGTTTTTCTCTTCCACCTCCACCCATTTATTGTAAATTCCTGCTCAATTCACTTTTTCAGTATCTGGATGCAATGAAGCACCAATTGGCAACCAACTTCATTTCTTTAGTGAGCTTTTTTATCTTGATGCAACAAGCCTTTTATGCTGATACTTCTGCTATTTCCACCTCTAGCAATTGGACGTGTAGATGTTTTTCTCCATACAAAGAAAATCAAAGATTATCAGTTGGTTCAAACTGTTCTACATCTTGTTCATGTACGCAAGATGTTGGGGGGATTGGATTGTGGACATGCATTTGTGCAACTGATGGCTTTCCAAAAATTGCAGCCGATCACCGTGATTCTAACTGTTTTACATCCTGCAATTGCTCGTCTGGATTGCTTCCAGAGTTGCCATCTTCTAAAAGGCATCTTTCAAGCAATGTGGTTGTGATTGTTCTCTTACTATGTGTAATAATCATAACATTAGCATTCCTCATCTTAGTGATTTGCTATCTTTCTCAAAGGGACAAGTGCCGAGTTCGAACTCCAATATTTTCATTAGATAATCAAATGAGCTACAACAGCTTGACCAATCTAATTAGTCACAGGAGTTCCTTAACACAAGATAGCAAGATTATGATGAGTTCCCCGGTGAATAGCACCAAGGGATGCTTTTACATAAACCAATGCTTGTTGAAGACTAAATCTAGGAGCATGTATGGGATCATCACCCAATTCTCTTACTCGGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGCAGGGCGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAGTTGAAGGAGGGTAGAACAGTGGCAGTCAAGCGGCTCAATATTCAAGGAGGCCCTGACGTGGACTACTTGTTCTTAACAGAAATACAGTTGTTATCAAGACTTCATCATTGTCACGTGGTGCCTCTACTTGGTTATTGCACAGAATCAAGGGGAAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGCAGCTTCGGGGAAACGAATGGATTGGAGTACTCGTGTTTCAATTGCTTTAGGAGCTGCTAGAGGCTTAGAATATCTCCATGAAGCTGCTGCTCCCAGGATTTTGCATAGAGATGTGAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTCGGTATGGCTACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCAAGAATGCAGGGGACTTTTGGTTACTTTGCTCCTGAGTATGCAATTGTTGGCAGAGCTTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTAGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGAAAGCAAAGGAGAGCAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGTAGGCGAGTCATAACCGAGTTGCCCGACCCGCATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCGTATTTAGCGAAGGAGTGCCTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAATGTTTTGCAGGGGAGGCTGTCAGCCTGTAGTATGGAGAGTGAACCAGACATCGTAGAGGACGACGTGGATCCTGTAGATGAACAAGTTCATACGGAGGTGACTCTCATCGATGATGTGACATCAAGGCAAGCTTCATCACGCAAATGGCTCGATTGCTATTCACTACCGTTGGAGATCGATCATTCACTCTGTGCTGGCAACAATGGCAGCCACGACATCGTTTCTTCCGAGTATATCAAAAGACTAATACCCTCAACTTTAAAAGGCAGCAATACTCAAGCCCCAGATGATGAAACAGTAGACTTGACCGAGCCACGGTTCGAGTCATTCTGCATTAAAGAAACTTGA 2028 42.26 MIFTGSLSTTIAGFSLPPPPIYCKFLLNSLFQYLDAMKHQLATNFISLVSFFILMQQAFYADTSAISTSSNWTCRCFSPYKENQRLSVGSNCSTSCSCTQDVGGIGLWTCICATDGFPKIAADHRDSNCFTSCNCSSGLLPELPSSKRHLSSNVVVIVLLLCVIIITLAFLILVICYLSQRDKCRVRTPIFSLDNQMSYNSLTNLISHRSSLTQDSKIMMSSPVNSTKGCFYINQCLLKTKSRSMYGIITQFSYSELENATNKFSSSHLAGRGGSSFVYRGELKEGRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDAASGKRMDWSTRVSIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSESKGEQSLAIWAAPRLQNSRRVITELPDPHLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVLQGRLSACSMESEPDIVEDDVDPVDEQVHTEVTLIDDVTSRQASSRKWLDCYSLPLEIDHSLCAGNNGSHDIVSSEYIKRLIPSTLKGSNTQAPDDETVDLTEPRFESFCIKET 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39521294 39528678 + Sed0004551.1 Sed05g2832 715458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2832 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2832 675 ProSiteProfiles Protein kinase domain profile. 264 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2832 675 SMART serkin_6 264 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2832 675 Pfam Protein kinase domain 268 542 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2832 675 FunFam receptor-like serine/threonine-protein kinase NCRK 238 344 - -
Sed05g2832 675 Gene3D Transferase(Phosphotransferase) domain 1 345 567 - -
Sed05g2832 675 FunFam receptor-like serine/threonine-protein kinase NCRK 345 556 - -
Sed05g2832 675 CDD STKc_IRAK 271 547 - -
Sed05g2832 675 SUPERFAMILY Protein kinase-like (PK-like) 245 544 IPR011009 -
Sed05g2832 675 PANTHER OS01G0750732 PROTEIN 104 559 IPR050885 -
Sed05g2832 675 Gene3D Phosphorylase Kinase; domain 1 236 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2832 Sed-Chr5:39521294 Sed05g2834 Sed-Chr5:39521294 0.00E+00 dispersed
Sed05g2826 Sed-Chr5:39467536 Sed05g2832 Sed-Chr5:39521294 2.40E-19 proximal
Sed05g2832 Sed-Chr5:39521294 Sed05g2833 Sed-Chr5:39521294 0.00E+00 tandem
Sed01g1017 Sed-Chr1:7562682 Sed05g2832 Sed-Chr5:39521294 8.50E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79240 PF00069 Pkinase 3.40E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2832 - - - 0.0