Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2834 ATGAAGCACCAATTGGCAACCAACTTCATTTCTTTAGTGAGCTTTTTTATCTTGATGCAACAAGCCTTTTATGCTGATACTTCTGCTATTTCCACCTCTAGCAATTGGACGTGTAGATGTTTTTCTCCATACAAAGAAAATCAAAGATTATCAGTTGGTTCAAACTGTTCTACATCTTGTTCATGTACGCAAGATGTTGGGGGGATTGGATTGTGGACATGCATTTGTGCAACTGATGGCTTTCCAAAAATTGCAGCCGATCACCGTGATTCTAACTGTTTTACATCCTGCAATTGCTCGTCTGGATTGCTTCCAGAGTTGCCATCTTCTAAAAGGCATCTTTCAAGCAATGTGGTTGTGATTGTTCTCTTACTATGTGTAATAATCATAACATTAGCATTCCTCATCTTAGTGATTTGCTATCTTTCTCAAAGGGACAAGTGCCGAGTTCGAACTCCAATATTTTCATTAGATAATCAAATGAGCTACAACAGCTTGACCAATCTAATTAGTCACAGGAGTTCCTTAACACAAGATAGCAAGATTATGATGAGTTCCCCGGTGAATAGCACCAAGGGATGCTTTTACATAAACCAATGCTTGTTGAAGACTAAATCTAGGAGCATGTATGGGATCATCACCCAATTCTCTTACTCGGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGCAGGGCGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAGTTGAAGGAGGGTAGAACAGTGGCAGTCAAGCGGCTCAATATTCAAGGAGGCCCTGACGTGGACTACTTGTTCTTAACAGAAATACAGTTGTTATCAAGACTTCATCATTGTCACGTGGTGCCTCTACTTGGTTATTGCACAGAATCAAGGGGAAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGCAGCTTCGGGGAAACGAATGGATTGGAGTACTCGTGTTTCAATTGCTTTAGGAGCTGCTAGAGGCTTAGAATATCTCCATGAAGCTGCTGCTCCCAGGATTTTGCATAGAGATGTGAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTCGGTATGGCTACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCAAGAATGCAGGGGACTTTTGGTTACTTTGCTCCTGAGTATGCAATTGTTGGCAGAGCTTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTAGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGAAAGCAAAGGAGAGCAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGTAGGCGAGTCATAACCGAGTTGCCCGACCCGCATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCGTATTTAGCGAAGGAGTGCCTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAATGTTTTGCAGGGGAGGCTGTCAGCCTGTAGTATGGAGAGTGAACCAGACATCGTAGAGGACGACGTGGATCCTGTAGATGAACAAGTTCATACGGAGGTGACTCTCATCGATGATGTGACATCAAGGCAAGCTTCATCACGCAAATGGCTCGATTGCTATTCACTACCGTTGGAGATCGATCATTCACTCTGTGCTGGCAACAATGGCAGCCACGACATCGTTTCTTCCGAGTATATCAAAAGACTAATACCCTCAACTTTAAAAGGCAGCAATACTCAAGCCCCAGATGATGAAACAGTAGACTTGACCGAGCCACGGTTCGAGTCATTCTGCATTAAAGAAACTTGA 1920 42.34 MKHQLATNFISLVSFFILMQQAFYADTSAISTSSNWTCRCFSPYKENQRLSVGSNCSTSCSCTQDVGGIGLWTCICATDGFPKIAADHRDSNCFTSCNCSSGLLPELPSSKRHLSSNVVVIVLLLCVIIITLAFLILVICYLSQRDKCRVRTPIFSLDNQMSYNSLTNLISHRSSLTQDSKIMMSSPVNSTKGCFYINQCLLKTKSRSMYGIITQFSYSELENATNKFSSSHLAGRGGSSFVYRGELKEGRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDAASGKRMDWSTRVSIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSESKGEQSLAIWAAPRLQNSRRVITELPDPHLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVLQGRLSACSMESEPDIVEDDVDPVDEQVHTEVTLIDDVTSRQASSRKWLDCYSLPLEIDHSLCAGNNGSHDIVSSEYIKRLIPSTLKGSNTQAPDDETVDLTEPRFESFCIKET 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39521294 39528678 + Sed0004551.3 Sed05g2834 715460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2834 639 Pfam Protein kinase domain 232 506 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2834 639 Gene3D Transferase(Phosphotransferase) domain 1 309 531 - -
Sed05g2834 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2834 639 PANTHER OS01G0750732 PROTEIN 89 523 IPR050885 -
Sed05g2834 639 CDD STKc_IRAK 235 511 - -
Sed05g2834 639 Gene3D Phosphorylase Kinase; domain 1 200 308 - -
Sed05g2834 639 SMART serkin_6 228 508 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2834 639 FunFam receptor-like serine/threonine-protein kinase NCRK 309 520 - -
Sed05g2834 639 FunFam receptor-like serine/threonine-protein kinase NCRK 202 308 - -
Sed05g2834 639 SUPERFAMILY Protein kinase-like (PK-like) 209 508 IPR011009 -
Sed05g2834 639 ProSiteProfiles Protein kinase domain profile. 228 511 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2832 Sed-Chr5:39521294 Sed05g2834 Sed-Chr5:39521294 0.00E+00 dispersed
Sed05g2834 Sed-Chr5:39521294 Sed05g2836 Sed-Chr5:39521294 1.40E-306 dispersed
Sed05g2833 Sed-Chr5:39521294 Sed05g2834 Sed-Chr5:39521294 0.00E+00 tandem
Sed05g2834 Sed-Chr5:39521294 Sed05g2835 Sed-Chr5:39521294 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79242 PF00069 Pkinase 3.00E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2834 - - - 0.0