Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2836 ATGATTTTTACTGGGTCTCTGTCCACCACAATTGCCGGTTTTTCTCTTCCACCTCCACCCATTTATTGTAAATTCCTGCTCAATTCACTTTTTCAGTATCTGGATGCAATGAAGCACCAATTGGCAACCAACTTCATTTCTTTAGTGAGCTTTTTTATCTTGATGCAACAAGCCTTTTATGCTGATACTTCTGCTATTTCCACCTCTAGCAATTGGACGTGTAGATGTTTTTCTCCATACAAAGAAAATCAAAGATTATCAGTTGGTTCAAACTGTTCTACATCTTGTTCATGTACGCAAGATGTTGGGGGGATTGGATTGTGGACATGCATTTGTGCAACTGATGGCTTTCCAAAAATTGCAGCCGATCACCGTGATTCTAACTGTTTTACATCCTGCAATTGCTCGTCTGGATGCTTTTACATAAACCAATGCTTGTTGAAGACTAAATCTAGGAGCATGTATGGGATCATCACCCAATTCTCTTACTCGGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGCAGGGCGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAGTTGAAGGAGGGTAGAACAGTGGCAGTCAAGCGGCTCAATATTCAAGGAGGCCCTGACGTGGACTACTTGTTCTTAACAGAAATACAGTTGTTATCAAGACTTCATCATTGTCACGTGGTGCCTCTACTTGGTTATTGCACAGAATCAAGGGGAAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGCAGCTTCGGGGAAACGAATGGATTGGAGTACTCGTGTTTCAATTGCTTTAGGAGCTGCTAGAGGCTTAGAATATCTCCATGAAGCTGCTGCTCCCAGGATTTTGCATAGAGATGTGAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTCGGTATGGCTACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCAAGAATGCAGGGGACTTTTGGTTACTTTGCTCCTGAGTATGCAATTGTTGGCAGAGCTTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTAGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGAAAGCAAAGGAGAGCAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGTAGGCGAGTCATAACCGAGTTGCCCGACCCGCATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCGTATTTAGCGAAGGAGTGCCTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAATGTTTTGCAGGGGAGGCTGTCAGCCTGTAGTATGGAGAGTGAACCAGACATCGTAGAGGACGACGTGGATCCTGTAGATGAACAAGTTCATACGGAGGTGACTCTCATCGATGATGTGACATCAAGGCAAGCTTCATCACGCAAATGGCTCGATTGCTATTCACTACCGTTGGAGATCGATCATTCACTCTGTGCTGGCAACAATGGCAGCCACGACATCGTTTCTTCCGAGTATATCAAAAGACTAATACCCTCAACTTTAAAAGGCAGCAATACTCAAGCCCCAGATGATGAAACAGTAGACTTGACCGAGCCACGGTTCGAGTCATTCTGCATTAAAGAAACTTGA 1755 42.91 MIFTGSLSTTIAGFSLPPPPIYCKFLLNSLFQYLDAMKHQLATNFISLVSFFILMQQAFYADTSAISTSSNWTCRCFSPYKENQRLSVGSNCSTSCSCTQDVGGIGLWTCICATDGFPKIAADHRDSNCFTSCNCSSGCFYINQCLLKTKSRSMYGIITQFSYSELENATNKFSSSHLAGRGGSSFVYRGELKEGRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDAASGKRMDWSTRVSIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSESKGEQSLAIWAAPRLQNSRRVITELPDPHLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVLQGRLSACSMESEPDIVEDDVDPVDEQVHTEVTLIDDVTSRQASSRKWLDCYSLPLEIDHSLCAGNNGSHDIVSSEYIKRLIPSTLKGSNTQAPDDETVDLTEPRFESFCIKET 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39521294 39528678 + Sed0004551.5 Sed05g2836 715462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2836 584 FunFam receptor-like serine/threonine-protein kinase NCRK 254 465 - -
Sed05g2836 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2836 584 FunFam receptor-like serine/threonine-protein kinase NCRK 147 253 - -
Sed05g2836 584 SUPERFAMILY Protein kinase-like (PK-like) 154 453 IPR011009 -
Sed05g2836 584 SMART serkin_6 173 453 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2836 584 PANTHER OS01G0750732 PROTEIN 125 468 IPR050885 -
Sed05g2836 584 Pfam Protein kinase domain 177 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2836 584 CDD STKc_IRAK 180 456 - -
Sed05g2836 584 Gene3D Phosphorylase Kinase; domain 1 145 253 - -
Sed05g2836 584 Gene3D Transferase(Phosphotransferase) domain 1 254 476 - -
Sed05g2836 584 ProSiteProfiles Protein kinase domain profile. 173 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2834 Sed-Chr5:39521294 Sed05g2836 Sed-Chr5:39521294 1.40E-306 dispersed
Sed05g2836 Sed-Chr5:39521294 Sed05g2838 Sed-Chr5:39521294 0.00E+00 dispersed
Sed05g2835 Sed-Chr5:39521294 Sed05g2836 Sed-Chr5:39521294 1.40E-306 tandem
Sed05g2836 Sed-Chr5:39521294 Sed05g2837 Sed-Chr5:39521294 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79244 PF00069 Pkinase 2.40E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2836 - - - 0.0