Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2838 ATGAAGCACCAATTGGCAACCAACTTCATTTCTTTAGTGAGCTTTTTTATCTTGATGCAACAAGCCTTTTATGCTGATACTTCTGCTATTTCCACCTCTAGCAATTGGACGTGTAGATGTTTTTCTCCATACAAAGAAAATCAAAGATTATCAGTTGGTTCAAACTGTTCTACATCTTGTTCATGTACGCAAGATGTTGGGGGGATTGGATTGTGGACATGCATTTGTGCAACTGATGGCTTTCCAAAAATTGCAGCCGATCACCGTGATTCTAACTGTTTTACATCCTGCAATTGCTCGTCTGGATGCTTTTACATAAACCAATGCTTGTTGAAGACTAAATCTAGGAGCATGTATGGGATCATCACCCAATTCTCTTACTCGGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGCAGGGCGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAGTTGAAGGAGGGTAGAACAGTGGCAGTCAAGCGGCTCAATATTCAAGGAGGCCCTGACGTGGACTACTTGTTCTTAACAGAAATACAGTTGTTATCAAGACTTCATCATTGTCACGTGGTGCCTCTACTTGGTTATTGCACAGAATCAAGGGGAAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGCAGCTTCGGGGAAACGAATGGATTGGAGTACTCGTGTTTCAATTGCTTTAGGAGCTGCTAGAGGCTTAGAATATCTCCATGAAGCTGCTGCTCCCAGGATTTTGCATAGAGATGTGAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTCGGTATGGCTACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCAAGAATGCAGGGGACTTTTGGTTACTTTGCTCCTGAGTATGCAATTGTTGGCAGAGCTTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTAGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGAAAGCAAAGGAGAGCAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGTAGGCGAGTCATAACCGAGTTGCCCGACCCGCATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCGTATTTAGCGAAGGAGTGCCTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAATGTTTTGCAGGGGAGGCTGTCAGCCTGTAGTATGGAGAGTGAACCAGACATCGTAGAGGACGACGTGGATCCTGTAGATGAACAAGTTCATACGGAGGTGACTCTCATCGATGATGTGACATCAAGGCAAGCTTCATCACGCAAATGGCTCGATTGCTATTCACTACCGTTGGAGATCGATCATTCACTCTGTGCTGGCAACAATGGCAGCCACGACATCGTTTCTTCCGAGTATATCAAAAGACTAATACCCTCAACTTTAAAAGGCAGCAATACTCAAGCCCCAGATGATGAAACAGTAGACTTGACCGAGCCACGGTTCGAGTCATTCTGCATTAAAGAAACTTGA 1647 43.05 MKHQLATNFISLVSFFILMQQAFYADTSAISTSSNWTCRCFSPYKENQRLSVGSNCSTSCSCTQDVGGIGLWTCICATDGFPKIAADHRDSNCFTSCNCSSGCFYINQCLLKTKSRSMYGIITQFSYSELENATNKFSSSHLAGRGGSSFVYRGELKEGRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDAASGKRMDWSTRVSIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSESKGEQSLAIWAAPRLQNSRRVITELPDPHLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVLQGRLSACSMESEPDIVEDDVDPVDEQVHTEVTLIDDVTSRQASSRKWLDCYSLPLEIDHSLCAGNNGSHDIVSSEYIKRLIPSTLKGSNTQAPDDETVDLTEPRFESFCIKET 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39521294 39528678 + Sed0004551.7 Sed05g2838 715464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2838 548 ProSiteProfiles Protein kinase domain profile. 137 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2838 548 PANTHER OS01G0750732 PROTEIN 117 432 IPR050885 -
Sed05g2838 548 FunFam receptor-like serine/threonine-protein kinase NCRK 218 429 - -
Sed05g2838 548 Gene3D Transferase(Phosphotransferase) domain 1 218 440 - -
Sed05g2838 548 SMART serkin_6 137 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2838 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2838 548 Gene3D Phosphorylase Kinase; domain 1 109 217 - -
Sed05g2838 548 Pfam Protein kinase domain 141 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2838 548 FunFam receptor-like serine/threonine-protein kinase NCRK 111 217 - -
Sed05g2838 548 CDD STKc_IRAK 144 420 - -
Sed05g2838 548 SUPERFAMILY Protein kinase-like (PK-like) 118 417 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2836 Sed-Chr5:39521294 Sed05g2838 Sed-Chr5:39521294 0.00E+00 dispersed
Sed05g2838 Sed-Chr5:39521294 Sed03g0302 Sed-Chr3:1832095 2.80E-64 dispersed
Sed05g2837 Sed-Chr5:39521294 Sed05g2838 Sed-Chr5:39521294 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79246 PF00069 Pkinase 2.10E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2838 - - - 0.0