Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2842 ATGGCTTATGGTAGTTCTAGATTCAAAGATGATCTTGAATCATCTACCCTGCCTACTCTAAATGGTGGTGGGATGAAGAAGATCATATACAAAATGGACGGCACACAAATACCCGAATCGAGCCGCAAGAGAACCGAGGTTTCTAGGAAGTCTTTCAGATCCTTAAGAGCTAAAGTTTTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTGCAGAAAAAAATATTGGATCCTAGCGGACAAACCATAAGGGTATGGAACAAGATATTTTTAGTCGCTTGTTTAGTCTCTTTGTTTGTAGACCCGCTTTTCTTTTACTTGCCTGTGGTCCGGGATAAGGTCTGCATCGATATAGGAGTAGATCTCGAAGTCGTCCTCACTACGTTAAGATCAATATCTGATGTTTTCTACGCAATTCATATTTTCATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATCGATCCCTGTAAGATAGCAATAAGGTATCTACGCCATGGTTTCTTGATTGATTTCATCGCAGCCCTGCCAGTTCCTCAGGTACTGATATGGATTGTGATCCCCAACCTCAGTGGTTCAACAATGACAAACACCAAGAACTTTCTAAGGTTCTTTCTCATAGTCCAGTACCTCCCAAGGCTTTTTCTCATGTTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTACAATTTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGATCCTGCTGGTACCTTCTTTCAATCGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTAAGTTTGACAAATCTTGCAATGACGGATTCTTCGACTGTCGTAAGGTCGACAACCCTCAAAGGGACTCGTGGTTTAACACGAGCAACATTCAAAATTCTTGCAATCCAGATAATCCCTTTTATCAACTTGGTATATATGGCGATGCAATAACTTTCCATGTCACAACCTCACCCTTTTTCAACAAGTATTTCTACTGCCTTTGGTGGGGCCTGAAAAATCTCAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTCCGTTGGGGAAATAATTTTTGCCATAATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATAGGCAATATGCAGAAATACCTCCAATCGACTACTGTTCGGTTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGACAACTACCTTTAGAGCTCAGACAATCTATCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAGGAAGCCCTCCTTAGAAGCCTTCCATTGGATCTTCGAAGAGACATAAAACGTCACCTCTGCCTCGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCCATATGCGAGAGACTTAAGCCTGTCTTGAGCACGGAAGGCACGTTTCTTGTGCGAGAAGGCGACCCAGTCAATGAAATGCTATTCATAATCAGAGGTCATCTCGATTCATACACCACGAATGGCGGTAGAACTGGCTTTTTCAACTCATGTTGTATCGGCCCAGGTGATTTCTGTGGTGAGGAGCTTCTAACTTGGGCTCTCGACCCTCGTCCAAGTGTCGTACTTCCTTCTTCCACTCGCACAGTCAAAGTCCTCTCGGAAGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTGAGACACAAGTTTCGATTCTACTCGCATCAATGGCGAACGTGGGCTGCGTGCTTTGTTCAAGCAGCATGGCGGCGATATAAGAGACGCAAAGAAAGAGCTGAGCTCATTGCTAGAGAGTGCTATCTAGCTACTATGCTCGAGTCCCCGCTTTCACTACCAACTACATCAAACATAGATGCATGTTCAGGAAACAACACTAGAAGGGGGATGGATAAGCGTTGTGTGTCAAACGTTGGGGTCGCAAGCTCGTTGCAGAAGCCAGAAGAGCCTGACTTCTCCATTGTTGAAGAATGA 2097 44.02 MAYGSSRFKDDLESSTLPTLNGGGMKKIIYKMDGTQIPESSRKRTEVSRKSFRSLRAKVLSRVFSEDYERVQKKILDPSGQTIRVWNKIFLVACLVSLFVDPLFFYLPVVRDKVCIDIGVDLEVVLTTLRSISDVFYAIHIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFLIDFIAALPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIVQYLPRLFLMFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGSCWYLLSIERQEACWRRLCKFDKSCNDGFFDCRKVDNPQRDSWFNTSNIQNSCNPDNPFYQLGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTSVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPLELRQSIRRYDQYKWVATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPVLSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCCIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKVLSEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELIARECYLATMLESPLSLPTTSNIDACSGNNTRRGMDKRCVSNVGVASSLQKPEEPDFSIVEE 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39547368 39550791 + Sed0005240.2 Sed05g2842 715468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2842 698 SUPERFAMILY Voltage-gated potassium channels 77 399 - -
Sed05g2842 698 SMART cnmp_10 477 605 IPR000595 -
Sed05g2842 698 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Sed05g2842 698 PRINTS EAG/ELK/ERG potassium channel family signature 258 268 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g2842 698 PRINTS EAG/ELK/ERG potassium channel family signature 390 399 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g2842 698 PRINTS EAG/ELK/ERG potassium channel family signature 346 363 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g2842 698 PRINTS EAG/ELK/ERG potassium channel family signature 141 150 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g2842 698 PRINTS EAG/ELK/ERG potassium channel family signature 372 383 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g2842 698 PRINTS EAG/ELK/ERG potassium channel family signature 440 447 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g2842 698 Gene3D - 89 401 - -
Sed05g2842 698 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 638 - -
Sed05g2842 698 FunFam Cyclic nucleotide-gated ion channel 1 475 593 - -
Sed05g2842 698 CDD CAP_ED 477 608 IPR000595 -
Sed05g2842 698 SUPERFAMILY cAMP-binding domain-like 407 602 IPR018490 -
Sed05g2842 698 Gene3D Jelly Rolls 475 595 IPR014710 -
Sed05g2842 698 ProSiteProfiles cAMP/cGMP binding motif profile. 477 562 IPR000595 -
Sed05g2842 698 Gene3D Helix hairpin bin 404 468 - -
Sed05g2842 698 Pfam Ion transport protein 84 404 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2842 Sed-Chr5:39547368 Sed14g0403 Sed-Chr14:4168233 7.80E-229 dispersed
Sed05g2841 Sed-Chr5:39547040 Sed05g2842 Sed-Chr5:39547368 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2842 K05391 - csv:101210775 1269.6