Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2845 ATGTTCCTATGGAACCATGGATTTGACCCTCTCGATTCGTACAACAAGTTAACAACCAAGCTCGTCTCCCTCACACGTCACCCTCCATCTTCTCTTTCTCTGTCTTTTTTTTTACAGTTAGTTTCCTCAGCCGATTCTCGACCGGATACCGCCGGAACCGCCGTGATTCTCCGACCAAGTCACGTCTGGGCTGAGTTCGAATCACAACCAGTACTGGAAAATCCCACCTCATATCTGAAGAGATCGGGACCTTTGCTCGTTGGTCCGACACTCAATCGCTTCCACGCGCCGTCGTCTTCATGCCTCGCCGAATGTAGCTCAACTTCTCTTCGGAATCCAGGAGTCATTGGAATGAAAGAAAACGCGGAGAAAAACTTGGATCCTCAACTATGGCATGCCTGTGCTGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTCTTTTACTTCCCTCAGGGCCACACCGAGCACGCTCAGGCCGCCGTCGATTTCACTTCTTCGCTTAGGATTCCGCCTCTTATACCCTGTCGAGTGCTCGCCCTCAAGTTCTTGGCCGACCTTGAAACGGATGAAGTTTATGCCAATATGAGATTGGTGCCACTGGCGAACAATGAGCTCAATTTTGAGGAAGAGGGCAGTTTTGGGAGTAATGGGTCTGAGAATAACTTGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCTGATGCCAACAATGGTGGGGGATTCTCGGTTCCGAGGTACTGCGCGGAGACGATATTTCCGCGGTTGGATTACACGGCGGATCCGCCGGTTCAGACTGTGATTGCCAAGGATGTCCATGGTGAAGTTTGGAAGTTTCGGCATATCTATAGAGGGACGCCTCGCCGGCATTTGTTAACTACTGGGTGGAGTAGTTTTGTCAATCAGAAGAAGCTGGTCGCAGGTGATTCGATTGTTTTTCTGCGATCGAAAAATGGCGACCTCTGTGTCGGGATCCGGCGAGCTAAACGGGCAATTGGGTGTGCGGCTGATCACCCTTATGGCTGGAATCCCGGGGGTGAAAATTGCATTCCACCATATGGTGGATTGACTATGTTTCTGAGAGATGAGGACAAGTTGAGTAGTAGAAAAGGGTCTTTGAGTTGTAATGGTGGTGGGAATTTGAGGAGGAAAGGGAAAGTGAGGCCGGAATCAGTGATTGAAGCGGCAACGCTTGCAGCGAACGGGCAGGCGTTTGAGGTTGTATATTATCCACGTGCAAGCACGCCGGAGTTCTGTGTTAAGGCCTCGTCGGTTCGAGCCGCCATGAGGATCCAGTGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGAATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCGTGGTTAGTTGAACTGGTATCGAACATGCCCGTCATTCAATTATCGCCGTTCTCATCACCAAGAAAGAAGTTTCGACTACCTCAACACCCAGATTTCCCCTTCGACAGCCAATTCCCATTGTTGTCGTTTCCGAGCAATACCCTTAGGCCAAACAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTGTCAGCTTTTTGTCTCAACAACAAACTGCAGTTAGGGCTGGTACCATCCAGTTTGCAGCAGCTTGATTTTCACTCTAGAATTTCCAATAGGTCAGTCACAGACCACAAAGACAGTAGCAGCCAGAACTCATCGGTGTTGCGAAACGCCGAAAAGACTGGTCCAAAGTTGGAAAGATCTGATTCATTGAAGAAGCATCAGTTCTTACTCTTTGGTCAACCTATACTCACTGAACAACAAATCAATTGCAACTCTATTAGTGACATTCGCTCACCACAAACCGAGAAAAGCTCATTGGATGCGAATCTAGAGAGAGTGAAGTTTCTATCTGATAGCCCAAGGCCCAGTTTCAAGCAGCAAGTTTCTCCAAATAAGTCACTAGGACCAGGATTTTCATGGTACCAGGGATATCAAGCCACTGACCTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGTCGAACGCTCAACCTTACCGCCATTGGCTCATATGAAGAACTATACAGGAGGCTCGCAAACATGTTTGGAATGGAAAAACCACACATTCTCAGCCATGTCCTGTACCAAGATGCAACAGGCGCTGTCAAACAAGCTGGAGATAAACCATTCAGTGATTTTATCAAAACAGCTAGAAGACTGACGATTCTAACTAGCTCGGGGTCGGACAAGATCGGAAGGACATTGATGGATGAAATGCGAAGTGTTGAAAAGGGATTAGATGCTTCAAACAAGACCAGTTCCTTGAGCATATTTGGCTAA 2499 47.98 MFLWNHGFDPLDSYNKLTTKLVSLTRHPPSSLSLSFFLQLVSSADSRPDTAGTAVILRPSHVWAEFESQPVLENPTSYLKRSGPLLVGPTLNRFHAPSSSCLAECSSTSLRNPGVIGMKENAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHTEHAQAAVDFTSSLRIPPLIPCRVLALKFLADLETDEVYANMRLVPLANNELNFEEEGSFGSNGSENNLEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGENCIPPYGGLTMFLRDEDKLSSRKGSLSCNGGGNLRRKGKVRPESVIEAATLAANGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSSPRKKFRLPQHPDFPFDSQFPLLSFPSNTLRPNSPMCCLSDNTSVGIQGARHTQFGISLSAFCLNNKLQLGLVPSSLQQLDFHSRISNRSVTDHKDSSSQNSSVLRNAEKTGPKLERSDSLKKHQFLLFGQPILTEQQINCNSISDIRSPQTEKSSLDANLERVKFLSDSPRPSFKQQVSPNKSLGPGFSWYQGYQATDLGLDIGHCKVFMESEDVGRTLNLTAIGSYEELYRRLANMFGMEKPHILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTSSGSDKIGRTLMDEMRSVEKGLDASNKTSSLSIFG 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39588931 39592799 + Sed0003995.1 Sed05g2845 715471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2845 832 CDD B3_DNA 229 330 IPR003340 GO:0003677(InterPro)
Sed05g2845 832 Pfam B3 DNA binding domain 230 331 IPR003340 GO:0003677(InterPro)
Sed05g2845 832 Gene3D - 436 509 - -
Sed05g2845 832 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 125 804 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed05g2845 832 MobiDBLite consensus disorder prediction 609 624 - -
Sed05g2845 832 FunFam Auxin response factor 228 332 - -
Sed05g2845 832 Pfam Auxin response factor 398 481 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed05g2845 832 MobiDBLite consensus disorder prediction 605 634 - -
Sed05g2845 832 ProSiteProfiles B3 DNA-binding domain profile. 230 332 IPR003340 GO:0003677(InterPro)
Sed05g2845 832 Gene3D - 228 332 IPR015300 -
Sed05g2845 832 ProSiteProfiles PB1 domain profile. 720 798 IPR053793 -
Sed05g2845 832 SUPERFAMILY DNA-binding pseudobarrel domain 225 335 IPR015300 -
Sed05g2845 832 SMART B3_2 230 332 IPR003340 GO:0003677(InterPro)
Sed05g2845 832 Gene3D - 720 805 - -
Sed05g2845 832 FunFam Auxin response factor 436 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2849 Sed-Chr1:23945631 Sed05g2845 Sed-Chr5:39588931 7.00E-198 dispersed
Sed05g2845 Sed-Chr5:39588931 Sed08g2648 Sed-Chr8:38656979 1.60E-71 dispersed
Sed14g0406 Sed-Chr14:4240115 Sed05g2845 Sed-Chr5:39588931 1.30E-244 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38655 PF02362 B3 8.90E-22 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2845 K14486 - csv:101216500 1293.1