Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2849 ATGGCCATGGCTGTAGCTCATCATGGGGAGAGTAGTAGTGGGAGCCTAACGAGGCATCTTGATAGTTCTGGAAAGTACGTTCGATACACAGCTGAGCAGGTTGACGCTCTTGAACGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGAAGGCAGCAACTCATCCGGGAATGCCCAATTCTTTCCAACATTGAGTCCAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGTAGGGAGAAGCAAAAGAAGGAAGCTTATCGGCTGCAAACAGTTAACAGGAAATTGAATGCTATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAATTGGTGTGTGAGAATGGGTTTATGAAGCAGCAGTTGCAAACAGTGCCAGCAGCAGCTACTGATGCAAGTCGTGATTCTGTGGTCGCCACTCCTCAACCCTCTCGGAGAGATGCTAATAACCCAGCTGGACTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGAATCTGTTGGGATTTTTGCTATTTCACAAAGTTGCGATGGAGTGGCAGCAAGAGCCTGTGGTCTTGTTAGTTTGGAGCCTTCGAAGATTGCAGAGATCCTTAAAGATCGTACATCTTGGTTTCGTGATTGTCGAAGCCTTGAAGTTTTTACCATGTTTCCTGCTGGAAATGGTGGGATAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACTCTTGCTCCTGCTTGCGATTTTTGGACTTTAAGATACACTATAACTTTGGAAAACGGCAGCCTTGTGGTATGCGAGAGATCTCTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCAGCTGCTGCTCAGTTTGTTAGAGCTGAGATGCTACCTAGTGGTTATCTGATTCGACCGTGTGAGGGTGGTGGGTCTATCATACATATAGTAGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGCTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTATGTGAGGCAAATAGCTCAAGAGACAAGCGGTGAAGTGGTTTATGGTGTTGGCCGGCAACCTGCTGTTCTGCGAACCTTTAGCCAAAGATTGAGCAGAGGTTTCAATGATGCCGTGAATGGATTTAATGACAATGGATGGTCATTGGTTAATTGCGAAGGTGCTGATGATGTGGTACTCGCTGTGAACTCTACGAAAAATTTGGCCACAGCATCCAACCCTGCTGACCCTTTGATGTATCCTGGGGGAGTTCTTTGTGCAAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCCTTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAATGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTGAAATCCAATTCATACGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAATCAAATCATCATGCCACTTGGCCACACAATCGAGCACGAAGAGTTGCTTGAAGTTATTCGACTTGAAGGACATCCTATGGTACACGAAGATGCCTTTGTTTCAAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGATGAGAATGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCCCCAATTGATGAGATGTTTCCAGACGATGCCCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCCGAACAAGTGATGCTAAAGGTACGTTGACTACACAACGGACTCTGGATCTAACATCGAGTCTTGAAGTGGGTTCTGGAACAAGCAATGCTGCTGGAGATCCATCGTCAAGCCCGAGATCAGTGTTAACTATCGCATTCCAGTTTCCTTTCGAAAGTAGCACGCAGGATAACGTAGTAAACATGGCACACCAGTATGTACGTAGCGTCATTTCCTCGGTGCAGAGAGTTGCAATGGCCATATCTCCATTTGGGGGCAGTCCCGCAATAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCTCATTGGATATGCAAGAGCTATAGTTACCATTTGGGAACCGAGTTGATTGGGTCAGATTCCTTGGAAAGTGATTCCCTGTTGAAAAATCTTTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGCAGCCGCAGCCTGTTTTCATGTTTGCAAACCAAACTGGGCTTGACATGCTGGAAACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATTTTCGACGAGGCGGGTCGCAAAGCTTTGTGTTCTGATTTCCCAAAGTTGATGCAGCAGGGGTTTGCATACTTGCCTGGAGGAATCTGTGCATCAACAATGGGGCGAGACATTTCATACGAACAAGCTGTTGCATGGAAAGTCCTTGAGGGGGACGAGACGACAGTCCATTGCCTTGCCTTCTCTTTCATGAACTGGTCTTTTGTTTGA 2529 46.42 MAMAVAHHGESSSGSLTRHLDSSGKYVRYTAEQVDALERVYAECPKPSSLRRQQLIRECPILSNIESKQIKVWFQNRRCREKQKKEAYRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMKQQLQTVPAAATDASRDSVVATPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPESVGIFAISQSCDGVAARACGLVSLEPSKIAEILKDRTSWFRDCRSLEVFTMFPAGNGGIIELVYTQVYAPTTLAPACDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGVGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLVNCEGADDVVLAVNSTKNLATASNPADPLMYPGGVLCAKASMLLQNVPPALLVRFLREHRSEWADFNIDAYSAATLKSNSYAYPGMRPTRFTGNQIIMPLGHTIEHEELLEVIRLEGHPMVHEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGTLTTQRTLDLTSSLEVGSGTSNAAGDPSSSPRSVLTIAFQFPFESSTQDNVVNMAHQYVRSVISSVQRVAMAISPFGGSPAIGPKLSPGSPEALTLAHWICKSYSYHLGTELIGSDSLESDSLLKNLWNHQDAILCCSLKQPQPVFMFANQTGLDMLETTLVALQDITLDKIFDEAGRKALCSDFPKLMQQGFAYLPGGICASTMGRDISYEQAVAWKVLEGDETTVHCLAFSFMNWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39624512 39630757 - Sed0002665.2 Sed05g2849 715475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2849 842 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Sed05g2849 842 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Sed05g2849 842 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Sed05g2849 842 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289(InterPro)
Sed05g2849 842 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Sed05g2849 842 Gene3D - 19 89 - -
Sed05g2849 842 Pfam START domain 164 372 IPR002913 GO:0008289(InterPro)
Sed05g2849 842 Pfam MEKHLA domain 697 841 IPR013978 -
Sed05g2849 842 SUPERFAMILY Bet v1-like 163 375 - -
Sed05g2849 842 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Sed05g2849 842 Gene3D - 199 378 IPR023393 -
Sed05g2849 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 842 IPR044830 GO:0003700(InterPro)
Sed05g2849 842 SMART START_1 163 373 IPR002913 GO:0008289(InterPro)
Sed05g2849 842 Coils Coil 90 121 - -
Sed05g2849 842 MobiDBLite consensus disorder prediction 135 157 - -
Sed05g2849 842 CDD bZIP 77 116 - -
Sed05g2849 842 MobiDBLite consensus disorder prediction 1 20 - -
Sed05g2849 842 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Sed05g2849 842 CDD START_ArGLABRA2_like 158 374 - -
Sed05g2849 842 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2849 Sed-Chr5:39624512 Sed11g0724 Sed-Chr11:11107502 0.00E+00 dispersed
Sed05g2848 Sed-Chr5:39624512 Sed05g2849 Sed-Chr5:39624512 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38657 PF01852 START 8.30E-44 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2849 K09338 - csv:101215773 1536.55