Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2850 ATGGCAAAGGACGTGGAAGCAGCCGAGCAGCAGGCGAAGGACTACCAAGACCCGCCCCCGGCCCCCCTCATCGACCGGGACGAGCTCACCAAATGGTCCCTCTACCGGGCCGCCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTGTACGTGACCGTCCTCACCGTCATCGGCTACTCCCACCAGAGCGACAAGTCCACAGTCCCCTTCGACCCCTGCGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGGGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGGCCTCTTCCTCGCCCGCAAGGTCTCCCTCGTCCGCGCCCTCCTCTACATCCTCGCCCAGTGCGCCGGCGCCATATGCGGCTGCGGCCTCGTCAAGGCCTTCCAGTCCGCCTTCTACGTCCGCTACAAGGGCGGCGCCAACATGCTGGCCGATGGCTACAACAAGGGCACTGGCCTCGGTGCCGAAATCATCGGTACCTTTGTTCTTGTCTACACCGTCTTCTCTGCCACGGATCCCAAGAGAAGTGCTAGAGACTCTCACGTACCCGTCTTGGCTCCACTCCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACTGGAATTAACCCTGCTAGAAGTTTCGGTGCTGCTGTTATTTACAACCAAGAAAAGGCCTGGGATGACCAATGGATTTTCTGGGTTGGGCCATTTATTGGAGCTGCCATTGCTGCAATTTACCACCAGTATGTGCTCAGAGCTGGCGCCATCAAAGCCCTTGGATCCTTCAGGAGCAACGCTTGA 852 59.98 MAKDVEAAEQQAKDYQDPPPAPLIDRDELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDKSTVPFDPCAGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYILAQCAGAICGCGLVKAFQSAFYVRYKGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNQEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39649883 39651798 + Sed0000794.1 Sed05g2850 715476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2850 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed05g2850 283 Pfam Major intrinsic protein 28 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 CDD MIP 36 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2850 283 SUPERFAMILY Aquaporin-like 28 269 IPR023271 -
Sed05g2850 283 Gene3D Glycerol uptake facilitator protein. 21 283 IPR023271 -
Sed05g2850 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Sed05g2850 283 FunFam Probable aquaporin PIP1-2 21 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2399 Sed-Chr3:20458362 Sed05g2850 Sed-Chr5:39649883 2.70E-11 dispersed
Sed05g2850 Sed-Chr5:39649883 Sed14g0415 Sed-Chr14:4313852 1.80E-128 dispersed
Sed05g0771 Sed-Chr5:6115347 Sed05g2850 Sed-Chr5:39649883 4.40E-106 transposed
Sed14g0413 Sed-Chr14:4282412 Sed05g2850 Sed-Chr5:39649883 6.80E-120 wgd
Sed03g2005 Sed-Chr3:13940345 Sed05g2850 Sed-Chr5:39649883 1.10E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2850 K09872 - csv:101215300 516.924