Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2859 | ATGTTTCTCCTCCAAATTCGGAAGCGCTTTAGGCCAAACAAACAAATCCCCATTTTCTCCATTTTTATCTCCAAATCTCCTCTTCATTCTTCCTCCTCCAGCCCATCTTCTCCGGCCGGACGACACGACACGACAATGACCGTAATCGACATCGTCTTCCGTGTCGATTCCATTTGCAAGAAATACGACAAGTATGATGTCGACAAGCAACGCGATCTCAACGCTTACGGCGACGATGTCTTTGCTCGCCTCTACGCCGCCGTCGAACACGAAATCGACGCTGCTCTCCAGAAATCTGAGAGTGCGTCTAAGGAGAAGAATAGGGCTGCAGCCGTTGCGATGAATGCCGAGGTTCGGAGGAAGAAGGCTCGGTTGATGGATGAAGTCCCCAAGCTTCGTAAATTGGCGCGCAAGAAGGTTAAAGGGGTTCCGAAAGAAGAACTTGAGGTCAGAGATGATCTTGTTATAGGGCTTGAAGACAGGATTAAAGCCATTCCAGATGGTAGCACAGCACCACCCAATCAATCTGCTGGATCTTCCTCCTCTAATAATATCAAGTTTGATTCCACTTCAGATGGAAACTTTGATCACGAGTATTTCCAACAAAGTGAAGAATCAAGTCAATTTCGACAGGAGCATGAAATGCGGAAGATGAAACAGGACGAAGGTCTAGATATAATATCTGAAGGGTTGGATTTGCTGAAAAATCTAGCTCATGAAATGAATGAGGAAATGGATAGGCAAGTTCCATTGATTGACGAGATTGACTCGAAGGTAGACAAGGCGTCTAATGACCTTAGAAATACCAATGTTAGGCTCAAGCAAACGCTCAATGAGGTGAGATCCAGCCAAAACTTCTGCATTGATATCATTCTTCTCTGTATAATTCTTGGAATTGCTTCATACTTGTACAATATATTGAGCTGA | 927 | 44.55 | MFLLQIRKRFRPNKQIPIFSIFISKSPLHSSSSSPSSPAGRHDTTMTVIDIVFRVDSICKKYDKYDVDKQRDLNAYGDDVFARLYAAVEHEIDAALQKSESASKEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLARKKVKGVPKEELEVRDDLVIGLEDRIKAIPDGSTAPPNQSAGSSSSNNIKFDSTSDGNFDHEYFQQSEESSQFRQEHEMRKMKQDEGLDIISEGLDLLKNLAHEMNEEMDRQVPLIDEIDSKVDKASNDLRNTNVRLKQTLNEVRSSQNFCIDIILLCIILGIASYLYNILS | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39708111 | 39710369 | - | Sed0015460.1 | Sed05g2859 | 715485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2859 | 308 | CDD | SNARE_Qc | 219 | 275 | - | - | |
Sed05g2859 | 308 | Gene3D | - | 213 | 275 | - | - | |
Sed05g2859 | 308 | MobiDBLite | consensus disorder prediction | 169 | 196 | - | - | |
Sed05g2859 | 308 | Pfam | SNARE domain | 251 | 300 | IPR000727 | - | |
Sed05g2859 | 308 | Coils | Coil | 252 | 279 | - | - | |
Sed05g2859 | 308 | PANTHER | SYNTAXIN | 88 | 295 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Sed05g2859 | 308 | MobiDBLite | consensus disorder prediction | 164 | 196 | - | - | |
Sed05g2859 | 308 | FunFam | Putative syntaxin-71-like | 214 | 275 | - | - | |
Sed05g2859 | 308 | Coils | Coil | 85 | 105 | - | - | |
Sed05g2859 | 308 | SUPERFAMILY | SNARE fusion complex | 207 | 274 | - | - | |
Sed05g2859 | 308 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 214 | 276 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1347 | Sed-Chr4:27791204 | Sed05g2859 | Sed-Chr5:39708111 | 3.50E-97 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2859 | K08506 | - | csv:101211289 | 426.017 |