Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2859 ATGTTTCTCCTCCAAATTCGGAAGCGCTTTAGGCCAAACAAACAAATCCCCATTTTCTCCATTTTTATCTCCAAATCTCCTCTTCATTCTTCCTCCTCCAGCCCATCTTCTCCGGCCGGACGACACGACACGACAATGACCGTAATCGACATCGTCTTCCGTGTCGATTCCATTTGCAAGAAATACGACAAGTATGATGTCGACAAGCAACGCGATCTCAACGCTTACGGCGACGATGTCTTTGCTCGCCTCTACGCCGCCGTCGAACACGAAATCGACGCTGCTCTCCAGAAATCTGAGAGTGCGTCTAAGGAGAAGAATAGGGCTGCAGCCGTTGCGATGAATGCCGAGGTTCGGAGGAAGAAGGCTCGGTTGATGGATGAAGTCCCCAAGCTTCGTAAATTGGCGCGCAAGAAGGTTAAAGGGGTTCCGAAAGAAGAACTTGAGGTCAGAGATGATCTTGTTATAGGGCTTGAAGACAGGATTAAAGCCATTCCAGATGGTAGCACAGCACCACCCAATCAATCTGCTGGATCTTCCTCCTCTAATAATATCAAGTTTGATTCCACTTCAGATGGAAACTTTGATCACGAGTATTTCCAACAAAGTGAAGAATCAAGTCAATTTCGACAGGAGCATGAAATGCGGAAGATGAAACAGGACGAAGGTCTAGATATAATATCTGAAGGGTTGGATTTGCTGAAAAATCTAGCTCATGAAATGAATGAGGAAATGGATAGGCAAGTTCCATTGATTGACGAGATTGACTCGAAGGTAGACAAGGCGTCTAATGACCTTAGAAATACCAATGTTAGGCTCAAGCAAACGCTCAATGAGGTGAGATCCAGCCAAAACTTCTGCATTGATATCATTCTTCTCTGTATAATTCTTGGAATTGCTTCATACTTGTACAATATATTGAGCTGA 927 44.55 MFLLQIRKRFRPNKQIPIFSIFISKSPLHSSSSSPSSPAGRHDTTMTVIDIVFRVDSICKKYDKYDVDKQRDLNAYGDDVFARLYAAVEHEIDAALQKSESASKEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLARKKVKGVPKEELEVRDDLVIGLEDRIKAIPDGSTAPPNQSAGSSSSNNIKFDSTSDGNFDHEYFQQSEESSQFRQEHEMRKMKQDEGLDIISEGLDLLKNLAHEMNEEMDRQVPLIDEIDSKVDKASNDLRNTNVRLKQTLNEVRSSQNFCIDIILLCIILGIASYLYNILS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39708111 39710369 - Sed0015460.1 Sed05g2859 715485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2859 308 CDD SNARE_Qc 219 275 - -
Sed05g2859 308 Gene3D - 213 275 - -
Sed05g2859 308 MobiDBLite consensus disorder prediction 169 196 - -
Sed05g2859 308 Pfam SNARE domain 251 300 IPR000727 -
Sed05g2859 308 Coils Coil 252 279 - -
Sed05g2859 308 PANTHER SYNTAXIN 88 295 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed05g2859 308 MobiDBLite consensus disorder prediction 164 196 - -
Sed05g2859 308 FunFam Putative syntaxin-71-like 214 275 - -
Sed05g2859 308 Coils Coil 85 105 - -
Sed05g2859 308 SUPERFAMILY SNARE fusion complex 207 274 - -
Sed05g2859 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1347 Sed-Chr4:27791204 Sed05g2859 Sed-Chr5:39708111 3.50E-97 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2859 K08506 - csv:101211289 426.017