Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2864 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGCAAGAATGTGTATTGCAATGGAAATTGTGAAGAGGGTCGTTGCAATTGTTGTCTATCCTCTTCAACTTCCTCTTGTTCATCAAATTCATCTTCAACGCCCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAGGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATCCACACCTTTGACCTCCAGCCACAGATCCTCTGCAGGGTTATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTACACAAAACTCAGTCTGCTTCCATTACCAGAGTTCTTAGGCACTGGTGTAGAGGGCAAAGAGTTGGAGGAATTGGCGTTAAATGGAGCTGATGGAGATGGGAATGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCAGACACGAGCACTCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATTGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTGACTACTGGATGGAGTCTTTTTGTTAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGAATAAGGCGAGCTGTTCGACCTAGAAATGGTCTTCCTGATTCAATTGTGGGCAACCAAAATTCTTGTGCAAATGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAAAGCATGTTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGCCAGAAGTATGTGATGAGCACTAATAATCCAGTGAGAGTAGGCACAAGATTCAAAATGAGATTTGATATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTATCGGTATTAGTGACATGGATCCTTTTAGATGGCCAAACTCGAAGTGGAGATGCTTGACGGTCCGATGGGATAAAGACAGTGCTCATCAAGAACGCGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTTCCACCCTTGAATGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCCAGCAGCCCCACTTAGTAAAGCCTTTACCGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAACTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCCTTTTATGGATGTGATACTGCAAATCGTTCACTGGAGTTCGAGGTGCGATCTTCTGCACAACAAAATCAAGTGTCGGGTGGAGCTGAAAAGATTACTTTAAGTGATTATGTAAAGGTTCATCCGAACGCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAATCAGAAAACCAGAATATAGTTCAGGTGTTTGGGGGAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCACTTGTTATCACATGGCGTCAAATGGTGCCCAAAACATGTATTTCCCTCGTAGCGATGTTTACGGTACTGGTCAGGCCGCTATGATGCGCTCAAATGATGGCAGCTTTCCAAGAGAGAATGTCTTGTTCAGCCCATCTGCCATTGATGCTGGTGCTATCAGAAATAAAATGGAAAGGGCTAATCATTCACTTGATCCAGAGTCTCTACGTCTATTTTCTGCTCCTCCAGCTTCAGGGTCGAATATTAGGAATTCAAAGGATGAAAATGTGAATGAGAACACAGCTGGTTGTAAACTTTTCGGCTTTTCGCTGACTAAGGAAACTACTACAAACATGCAAAGTTCAGGGAAGAGAAGCTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCCATTGATCTCTCTAGACTGAATGGCTATACTGATCTGCTATCTGAACTGGAGCGGCTGTTTAGCATGGAAGGACTCTTGAAAGATCCCGACAAAGGATGGCAAGTACTGTATACCGACAACGAGAATGACGTAATGGTTGTTGGGGATTATCCATGGCATGACTTTTGTGATGCTGTTTCAAAAATCCATATATATACCCAAGAAGAAGTTGAGAAGATGATAAATGGAGTGATGATCAGTGATGATACTCAAAGCTGCTTAGACCAAGCTCCTTTATGTATGGAAGCGTCGAAATCTTCTTCAGTGGGCCAACCTGATTCTTCTCCAACAGTAGTAAGAGAGTTTAATCAGTAA 2421 44.07 MEIDLNQTASEVGKNVYCNGNCEEGRCNCCLSSSTSSCSSNSSSTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEIHTFDLQPQILCRVINVHLLANKENDEVYTKLSLLPLPEFLGTGVEGKELEELALNGADGDGNGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLARVVKAISTKSMFDVFYNPRAYHAQFVISCQKYVMSTNNPVRVGTRFKMRFDMDDSPERRFNGVVIGISDMDPFRWPNSKWRCLTVRWDKDSAHQERVSPWEIDPSVSLPPLNVQSSPRLKKLRTSLPAAPLSKAFTGRGGFMDFEDSTRSSKVLQGQENVGIVSPFYGCDTANRSLEFEVRSSAQQNQVSGGAEKITLSDYVKVHPNASFTGFMESDRFLKVLQGQEICSLRPPIRKPEYSSGVWGKFNLSDNSFNTFQSPNSTCYHMASNGAQNMYFPRSDVYGTGQAAMMRSNDGSFPRENVLFSPSAIDAGAIRNKMERANHSLDPESLRLFSAPPASGSNIRNSKDENVNENTAGCKLFGFSLTKETTTNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWQVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMINGVMISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVVREFNQ 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39757193 39764087 + Sed0025230.1 Sed05g2864 715490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2864 806 Gene3D - 167 271 IPR015300 -
Sed05g2864 806 SUPERFAMILY CAD & PB1 domains 675 753 - -
Sed05g2864 806 ProSiteProfiles PB1 domain profile. 674 758 IPR053793 -
Sed05g2864 806 FunFam Auxin response factor 669 763 - -
Sed05g2864 806 Gene3D - 670 763 - -
Sed05g2864 806 CDD B3_DNA 167 269 IPR003340 GO:0003677(InterPro)
Sed05g2864 806 FunFam Auxin response factor 332 402 - -
Sed05g2864 806 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677(InterPro)
Sed05g2864 806 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
Sed05g2864 806 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677(InterPro)
Sed05g2864 806 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 763 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed05g2864 806 FunFam Auxin response factor 167 271 - -
Sed05g2864 806 Pfam AUX/IAA family 721 758 IPR033389 -
Sed05g2864 806 SMART B3_2 169 271 IPR003340 GO:0003677(InterPro)
Sed05g2864 806 Gene3D - 333 402 - -
Sed05g2864 806 Pfam Auxin response factor 296 376 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed05g2864 806 MobiDBLite consensus disorder prediction 786 806 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2864 Sed-Chr5:39757193 Sed11g1995 Sed-Chr11:34122701 3.50E-132 dispersed
Sed05g2864 Sed-Chr5:39757193 Sed14g1492 Sed-Chr14:23266471 1.30E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38659 PF02362 B3 8.90E-21 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2864 K14486 - csv:101212503 1420.99