Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2881 ATGGAAGGAAGTGACACAATCACTACCGTTTCATCAACTCCACTCTCTCAATCTTCTTCCTCTTCTTCTTCTCCGGTGCCGGCTCCGGCGCCGGTCGTCATTCTCAGTCCTTGTGCGGCCTGCAAGATTTTGCGCCGGCGATGTGCCGCCGATCGATGTGTTTTGGCGCCATATTTCCCTCCCACCGACCCTGCCAAGTTCGCCATCGCTCATCGCGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAACTGCCTGAATCTCAAAGGGCGGATGCAGTGAGCAGCTTGGTTTATGAAGCGGGTGCTAGAATCAGGGACCCGGTATACGGGTCGGCAGGGGCGATCTGCGCACTCCAAAAGCAAGTGAACGAGCTTCAAGCGCAGCTAGCGAAGGCCCAGGTCGAGGTGGTGAACATGCAGTGCCAACAGGCCAATCTGGTGGCCTCTGTTTGCAAGGAGTTGGCTCATTCTCATCAGTGTTTTGATGATTTCAATGCCAACCCTCAGAGTGGCTTGCACAGCTTCGCCCAAAGTTACTTTGATGATAGCGATGATTCAAACCCATTGTTGGAGCCTCTCTGGACATGA 594 53.37 MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFAQSYFDDSDDSNPLLEPLWT 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39841616 39843428 - Sed0012951.1 Sed05g2881 715507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2881 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 158 - -
Sed05g2881 197 Coils Coil 117 144 - -
Sed05g2881 197 MobiDBLite consensus disorder prediction 1 28 - -
Sed05g2881 197 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Sed05g2881 197 MobiDBLite consensus disorder prediction 1 27 - -
Sed05g2881 197 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0982 Sed-Chr1:7288453 Sed05g2881 Sed-Chr5:39841616 4.30E-55 dispersed
Sed04g2762 Sed-Chr4:39725827 Sed05g2881 Sed-Chr5:39841616 8.40E-43 dispersed
Sed05g2881 Sed-Chr5:39841616 Sed07g2403 Sed-Chr7:39877444 3.70E-43 dispersed
Sed01g0981 Sed-Chr1:7263903 Sed05g2881 Sed-Chr5:39841616 9.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38660 PF03195 LOB 5.10E-39 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2881 - - - 0.0