Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2881 | ATGGAAGGAAGTGACACAATCACTACCGTTTCATCAACTCCACTCTCTCAATCTTCTTCCTCTTCTTCTTCTCCGGTGCCGGCTCCGGCGCCGGTCGTCATTCTCAGTCCTTGTGCGGCCTGCAAGATTTTGCGCCGGCGATGTGCCGCCGATCGATGTGTTTTGGCGCCATATTTCCCTCCCACCGACCCTGCCAAGTTCGCCATCGCTCATCGCGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAACTGCCTGAATCTCAAAGGGCGGATGCAGTGAGCAGCTTGGTTTATGAAGCGGGTGCTAGAATCAGGGACCCGGTATACGGGTCGGCAGGGGCGATCTGCGCACTCCAAAAGCAAGTGAACGAGCTTCAAGCGCAGCTAGCGAAGGCCCAGGTCGAGGTGGTGAACATGCAGTGCCAACAGGCCAATCTGGTGGCCTCTGTTTGCAAGGAGTTGGCTCATTCTCATCAGTGTTTTGATGATTTCAATGCCAACCCTCAGAGTGGCTTGCACAGCTTCGCCCAAAGTTACTTTGATGATAGCGATGATTCAAACCCATTGTTGGAGCCTCTCTGGACATGA | 594 | 53.37 | MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFAQSYFDDSDDSNPLLEPLWT | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39841616 | 39843428 | - | Sed0012951.1 | Sed05g2881 | 715507 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2881 | 197 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 36 | 158 | - | - | |
Sed05g2881 | 197 | Coils | Coil | 117 | 144 | - | - | |
Sed05g2881 | 197 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed05g2881 | 197 | Pfam | Lateral organ boundaries (LOB) domain | 37 | 135 | IPR004883 | - | |
Sed05g2881 | 197 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed05g2881 | 197 | ProSiteProfiles | LOB domain profile. | 36 | 138 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0982 | Sed-Chr1:7288453 | Sed05g2881 | Sed-Chr5:39841616 | 4.30E-55 | dispersed | |
Sed04g2762 | Sed-Chr4:39725827 | Sed05g2881 | Sed-Chr5:39841616 | 8.40E-43 | dispersed | |
Sed05g2881 | Sed-Chr5:39841616 | Sed07g2403 | Sed-Chr7:39877444 | 3.70E-43 | dispersed | |
Sed01g0981 | Sed-Chr1:7263903 | Sed05g2881 | Sed-Chr5:39841616 | 9.20E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38660 | PF03195 | LOB | 5.10E-39 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2881 | - | - | - | 0.0 |