Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2892 ATGGACGACTTCTTCGACAATATACCGCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTTATCATCCCCGTCGAGTCCGCTCATCGAGCCATTTCGTACCTTGGCGAGCTCGGCATTCTTCAATTCAAAGATTTAAACGAGGATAAAAGTCCTTACCAAAGAAACTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTAAGATTTTTCAACGAACAAATCAGTAAAGCTGGTGTAATGACGTCTATACAACCAATTCTCCAAGAACATATGGAGCTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGTGAGAAACTTCAACAGTCCTTTAATGAACTCTTAGAATTCAAGATGGTACTGCAAAAGGCAAGCATTTTTCTAGCGACCAGTAATAGCCATTTAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATCTTGAGGATGGATCGTTACTTGAACAGGAAATGAGATCTGGACCGTCCAGCCAATCTGGTTTGAGATTTGTTTGTGGAATTATTTGTAAGTCCAAAGTTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGCAATATGCTTTTCAATCAGGCACCAACAGATGTCCAGATCATGGATCCCATATCTACGGAAATGGTTGAGAAAGCAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAATTTTGAAGATCTGCGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAATTAGAGAAGTTTCATCTCGCCTCACTGAACTTGAAGCCACTTTAGATGCTGGGATCCGACACCGAAATGAGGCTCTTGCATCAATAGAGTTTCATTTGGTTAAATGGATGAATATGGTAAGAAGGGAAAAAGCTGTATATGATACATTGAACATGTTGAATTTTGACGTCACTAAAAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAAACTCAGATTCAAGAGGCACTGCAGCGAGCAACATTTGATAGCAGTTCACAAGTGGGCATAATATTTCATGTGATGGATACGGTTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTGACAAGTGCTTTTCAGGAAATTGTTGATGCCTATGGTGTTGCTAGGTATCAAGAAGCAAATCCTGCAGTTTACTCTGTTATTACATTTCCATTCCTATTCGCAGTGATGTATGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCGATAATAAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGTCGCTATGTTCTTCTTTTGACGTCCATATTTTCAATTTATTGTGGGCTGATCTACAATGAGTTTTTCTCTGTTCCTTTTCATATATTTGGTGCGTCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACACCGTTGGGTTAGTTAAATACCGTGATCCCTATCCATTTGGTGTTGACCCAAGTTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGATGTCTGTCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCACGGTTTACCGGAAGCTCACTTGATATCAGGTACCAGTTTGTACCACAAGCGATCTTTCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGTACTGGATCTCAAGCAGATCTCTACCATGTGATGATTTACATGTTTTTGAGTCCATTTGACGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCACTTCAAATTGTTTTGTTGATGTTGGCTGTAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAAATTCACACAGAGAGATTTCAAGGTCGTACCTATGGGATGCTTGGATCTTCTGAGACAGATCTTGAGGTCGAACCTGATTCGGCAAGGCAACACCAGGAGGACTTCAACTTTGTTGAGATCTTTGTTCACCAAATGATCCATTCCATAGAATTTGTCTTGGGTGCAGTTTCGAATACAGCATCCTATCTTCGACTTTGGGCTTTAAGCTTGGCACACTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTTGTCATCCGGCTGATTGGTTTAGCTGTTTTTTCCTTTGCCACTGCTTTCATACTTCTTATGATGGAGACCCTTGGTGCCTTCCTTCACGCATTGCGTCTTCATTGGATCGAGTTTCAAAATAAGTTCTACCACGGTGATGGCTACAAGTTCAAACCTTTTTCCTTTGCCTCCATCAATGTGGATGAAGATTAA 2460 40.45 MDDFFDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFKDLNEDKSPYQRNFVNQVKRCAEMSRKLRFFNEQISKAGVMTSIQPILQEHMELEDLEIRLADHEHELIEMNSNSEKLQQSFNELLEFKMVLQKASIFLATSNSHLVSEERELNENVFLNDNYLEDGSLLEQEMRSGPSSQSGLRFVCGIICKSKVLRFERMLFRATRGNMLFNQAPTDVQIMDPISTEMVEKAVFVVFFSGEQARNKILKICEAFGANCYPVPEDITKQRQIIREVSSRLTELEATLDAGIRHRNEALASIEFHLVKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTSAFQEIVDAYGVARYQEANPAVYSVITFPFLFAVMYGDWGHGICLLLGALFLIARESKLDNKKLGSFMEMLFGGRYVLLLTSIFSIYCGLIYNEFFSVPFHIFGASAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKMSVLLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQAIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIVLLMLAVVAVPWMLFPKPFILKKIHTERFQGRTYGMLGSSETDLEVEPDSARQHQEDFNFVEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLGAFLHALRLHWIEFQNKFYHGDGYKFKPFSFASINVDED 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39910454 39921581 + Sed0008772.1 Sed05g2892 715518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2892 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Sed05g2892 819 PANTHER VACUOLAR PROTON ATPASES 11 815 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Sed05g2892 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed05g2892 819 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0903 Sed-Chr1:6518136 Sed05g2892 Sed-Chr5:39910454 0.00E+00 dispersed
Sed04g3911 Sed-Chr4:47262737 Sed05g2892 Sed-Chr5:39910454 2.60E-292 dispersed
Sed05g2301 Sed-Chr5:35519962 Sed05g2892 Sed-Chr5:39910454 4.40E-292 dispersed
Sed01g0902 Sed-Chr1:6518136 Sed05g2892 Sed-Chr5:39910454 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2892 K02154 - csv:101216514 1549.64